Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 333 / 1e-112 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 322 / 1e-108 Terpenoid synthases superfamily protein (.1) AT3G14530 292 / 8e-97 Terpenoid synthases superfamily protein (.1) AT3G14550 291 / 2e-96 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G29430 284 / 9e-94 Terpenoid synthases superfamily protein (.1) AT3G20160 283 / 2e-93 Terpenoid synthases superfamily protein (.1) AT2G23800 282 / 1e-92 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 281 / 3e-92 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G32040 277 / 6e-91 Terpenoid synthases superfamily protein (.1) AT3G14510 262 / 4e-86 Polyprenyl synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028507 [exp] 543 / 0 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 504 / 3e-180 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 431 / 2e-151 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 416 / 3e-145 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 399 / 1e-137 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 330 / 2e-111 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 327 / 4e-110 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 294 / 1e-99 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10025096 [exp] 202 / 4e-62 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 385 / 4e-133 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 355 / 2e-121 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 348 / 1e-118 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 332 / 2e-112 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 325 / 8e-110 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 211 / 2e-65 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 205 / 3e-63 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.015G043400 [exp] 91 / 1e-20 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 88 / 6e-19 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.010G138800 [exp] 57 / 7e-09 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10009138 pacid=23150062 polypeptide=Lus10009138 locus=Lus10009138.g ID=Lus10009138.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTATCTCCTTCTCTCTAACTAATTCAACCATCTCTTCTCCTCCTCATCTGAATAAACCCCTCATCATATTCAACGACATTAACATTATCA GCAAATCCCAATCTCCACGACCACAATCCAAGCTCCTCCCTTTTAAACTCCGCGCTTCCTCTGTTTCTCCCCTGCATCATCATCATCATCATGAACATAA TAAGCCCAATCTTCCCGATTTCAATTTCCGGGAATATATGATTGACAAGGTCAACCGAGTGAACAAGGCTCTGGAAGAGGCCATCCCACTCCGCCACCCT CTCAAAGTCTACGAGGCAATGCGCTACTCCCTCCTCGCCGGCGGCAAGCGGGTCCATCCGGTCCTCTGCATCGCCGCCTGCGAGATGTTCGGCGGGGATG AATTGCTCGCAATGCCGATGGCATGTGCCACCGAGATGATCAACACCATGTCCCTTATGCACAATGACCTCCCCTGTATAGACAACGACGACTTCCGCCG TGGAAAGCCCGCCAACCACAAGAAGTTCGGAGAGAATACAACTCTTCTCGCTGGTGATGCCCTCCTCTCGTTCGCCTTCGAGCACTTGGCCACCCAAGCC TTGAAAAATGTCCCGCCCGAACGAATTCTCCGAACGATTGCCGAGCTTGGATCAGCCACGGGGGCCGCTGGAATGGCCGCCGGCCAGTTTGTCGACATAG CCGGCCAAGGCAAGAAAGTGAGTTTGGAGGAGGTAGAGTACATACACATCCACAAGGCTGCGAAGCTCGCGGAGGCGGCGGCAGTGTGCGGTGCGATTAT CGGCGGAGCGGACGAGGAGGGCGTGGAGAGGTTGAGGAAGTACTCGGCGTGTGTGGGATTGCTGAGCCAGATAGTAGACGATATACTGGACGTGACGGGC TCGTTGGAGCAACTGGAGAAGGCCGCCGGCAAGGATGTTGCTAGCGATAAAGCCACGTATCCGAAAGTGTTGGGTCTGGATGGTGTCAGGAAGTTGGCTA TGGAGCTGGTGGATGAAGCCAATAAAGAGTTGGTTGGATTTGATCCTGTTAAGGCCGCACCACTTTATCATTATACTAATTACATTGCTACTCGACAAAA CTAA
AA sequence Show only first row Show all	>Lus10009138 pacid=23150062 polypeptide=Lus10009138 locus=Lus10009138.g ID=Lus10009138.BGIv1.0 annot-version=v1.0 MASSISFSLTNSTISSPPHLNKPLIIFNDINIISKSQSPRPQSKLLPFKLRASSVSPLHHHHHHEHNKPNLPDFNFREYMIDKVNRVNKALEEAIPLRHP LKVYEAMRYSLLAGGKRVHPVLCIAACEMFGGDELLAMPMACATEMINTMSLMHNDLPCIDNDDFRRGKPANHKKFGENTTLLAGDALLSFAFEHLATQA LKNVPPERILRTIAELGSATGAAGMAAGQFVDIAGQGKKVSLEEVEYIHIHKAAKLAEAAAVCGAIIGGADEEGVERLRKYSACVGLLSQIVDDILDVTG SLEQLEKAAGKDVASDKATYPKVLGLDGVRKLAMELVDEANKELVGFDPVKAAPLYHYTNYIATRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	0	1
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10026200 [exp]	2.0	0.9183
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	3.5	0.9107
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	3.5	0.9212
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	5.0	0.9066
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	6.2	0.9140
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10024770 [exp]	6.3	0.8930
					Lus10022643 [exp]	8.9	0.8691
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023620 [exp]	9.3	0.8195
					Lus10003852 [exp]	10.6	0.8931
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	11.0	0.9018

Compare expression of checked genes

Lus10009138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.