Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16715 1130 / 0 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 430 / 1e-134 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G49030 164 / 2e-41 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 147 / 7e-36 tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G27160 60 / 8e-10 valyl-tRNA synthetase / valine--tRNA ligase-related (.1) AT4G04350 50 / 1e-05 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G09620 47 / 8e-05 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028505 [exp] 1298 / 0 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 419 / 8e-131 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 414 / 5e-130 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10043413 [exp] 181 / 1e-46 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 177 / 1e-45 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10041706 [exp] 145 / 4e-35 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10024041 [exp] 144 / 1e-34 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10015552 [exp] 48 / 4e-05 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10005156 [exp] 46 / 0.0002 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G124500 [exp] 1212 / 0 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.004G090732 [exp] 579 / 0 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.005G087850 [exp] 526 / 6e-172 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.007G004100 [exp] 449 / 2e-142 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.010G014500 [exp] 181 / 1e-46 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 143 / 2e-34 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 117 / 1e-26 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.004G090666 [exp] 92 / 4e-22 AT5G16715 80 / 9e-19 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.004G090766 [exp] 55 / 5e-09 AT5G16715 44 / 3e-06 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 53 / 8e-07 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0298 [flax] [poplar] tRNA_bind_arm PF10458 [flax] [poplar] Val_tRNA-synt_C Valyl tRNA synthetase tRNA binding arm
Representative CDS sequence Show only first row Show all	>Lus10009139 pacid=23150041 polypeptide=Lus10009139 locus=Lus10009139.g ID=Lus10009139.BGIv1.0 annot-version=v1.0 ATGCCGTCGTTCTACTTCATTCATCTCCCCATGGAAATTCACAAGTCACCGCCGCCTAGGCTTCTTGGCAGTCTCCTGCTGCTAGGTAGGAAATTTAACG GGCTATCATCCTTTACGAATATTTCAGTTGCAACTGAGAATGGAGGGTTTACCTCTCCTGAGTTGGCCAAGTCCTTCGATTTCTCTGCAGAGGAACGGAT CTACAAATGGTGGGAGTCACAAGGGTACTTCAAGCCATCCTTTGATCGAGGAAGTGATCCATTTGTGATATCGATGCCGCCGCCCAATGTTACTGGGTAT CTGCATATGGGGCATGCCATCTTTGTCACCCTCGAGGATATCATGGTCAGATACAATCGAATGAAGGGAAGACCAACATTGTGGATTCCTGGATCCGATC ATGCTGGGATTGCAACTCAGCTGGTTGTAGAGAAAATGCTTCAAAGTGAAGGACTGAAGAGGACTGAAGTGGGAAGAGATAAATTTACAGAGCGTGTATG GGAGTGGAAAGAAAAACATGGTGCCACAATCACAAATCAAATTAAAAGACTGGGTGCTTCCTGCGATTGGACCAGAGAGCACTTCACCCTTGATGAGCAG CTAAGTCGATTATGGCGTTTAGTGGCTACCGTAGCTTCTGCTCAGAACGATGACCGCTATTCCAAATACATTGGCCAAATGGCGATTGTGCCTATGACAT ACGGTCGCCATGTGCCTATCATTGCTGATAAGTATGTTGATAAGGAGTTTGGGACTGGCGTATTGAAGATAAGTCCTGGACATGATCATAATGATTATGT TCTTGCTCGAAAGCTTGGTCTCCCGATACTTAATGTGATGAATAAAGATGGGACTCTTAATGACGTTGCTGGACTGTACAGTGGTCTTGATCGATTTGAG GCTCGAAAGCAACTCTGGTCAGAACTTGAGGAGACAAACTTAGCTGTGAAAAAGGAGGCACATACCTTAAGAGTTCCCAGATCCCAGCGTGGTGGAGAGA TAATAGAACCATTGGTGAGTAAGCAGTGGTTTGTGAATATGGAATCTCTGGCTGAGAAGGCCCTTCATGTCGTTCAAAACGGAGAAATAACCGTAATGCC TGAAAGATTTGAGAAGATTTATAATCATTGGCTATCCAACATTAAGGATTGGTGTATAAGCAGACAGCTTTGGTGGGGTCACCGCATACCTGTTTGGTAC GTTGAAGGGAGAAGCGCTGAAGACGACTATATAGTTGCTAGGAATGAAAGTGAAGCCCTAGAGAAAGCTCGTGAAAAATATGGAGAACGTGTAGAAATAT ATCAAGATCCAGATGTTCTCGACACATGGTTTTCAAGTTCACTATGGCCTTTTAGCACTCTTGGATGGCCTGACGAGTCATCAGAAGATTATACGAGGTT CTATCCAACAACAACGCTCGAAACTGGGCATGATATTTTGTTCTTCTGGGTAGCAAGGATGGTTATGATGGGAATCGAGCTTACTGGGAGAGTTCCATTT TCAAATATTTATCTTCATGGACTTATTCGAGATGCACAAGGGAGGAAAATGTCTAAAACACTGGGGAATGTAATAGATCCTCTGGATACAATCAAGGAGT ATGGCACTGATGCTTTACGATTCACTCTTGCTCTTGGAACTGCTGGACAGGATCTTAATTTGTCGATGGAGAGATTGACTGCTAATAAAGCATTTACTAA CAAACTATGGAATGCGGGGAAGTTTTTGTTACAGAACTTGCCTAGTCAGACTGATTCATTTGCTTGGGAAGCTATAGTTGCTCATAAGTTTGACGCAGAG AAGTCGCTTCTCAGGCTACCTTTACCAGAATGCTGGGTGGTCTCGAAACTCCATTCGCTCATCGACACTGTGACTGCAAGCTATGACAAATATTTCTTTG GGGACGTGGGGAGAGAAATCTATGATTTCTTCTGGAGTGATTTTGCCGATTGGTACATTGAAGCCAGTAAAGCTCGGCTATACCAGTCAGGAGAGGACTC AACTGCTTCTGTGGCACAGGCAGTTCTATTATATGTTTTCGAAAATATTTTAAAAATGCTACATCCCTTCATGCCGTTTGTTACCGAAGAGCTTTGGCAG GCTCTCCCTGATCGTAAACAAGCTCTCATAATATCTTCATGGCCCCAGACTGCTCTTCCACGACATGCTAGCTCAATAAGACAATTTGAAAATTTTCAAG CTTTAACTCGAGCAATCCGAAATGTTCGAGCAGAATATTCGGTGGAGCCTGCCAAACGTATTTCTGCATCTATAGTTGCCAACAAAGACGTTGTCCAGTA TATCTCTAATGAGAAGGAAGTTTTGGCTCTTCTTTCCCGGCTCGATTTGCAAAATGTCCATTTCTCCACGTCTCCTTCAGAGGATGCAAATAAATCTGTA CACATTGTTGCTAGTGAAGGGCTGGAAGCTTATCTCCCACTTGCCGATATGGTCGATATATCTGCTGAAGTTGAACGGCTTTCCAAGCGCCTTTCGAAGA TGCAGACCGAGTACGATAGTCTTGTAGCCCGGCTCAGTTCTTCCAAATTTGCAGAGAAAGCACCGGAGGATGTTGTCCGTGGAGTTAGAGAAAAAGCAGC AGAGGCAGAAGAGAAGATAAACCTGACAAAGAACCGGCTTGATTTTCTGAGGTCTTCTGCCTTGATATCATAA
AA sequence Show only first row Show all	>Lus10009139 pacid=23150041 polypeptide=Lus10009139 locus=Lus10009139.g ID=Lus10009139.BGIv1.0 annot-version=v1.0 MPSFYFIHLPMEIHKSPPPRLLGSLLLLGRKFNGLSSFTNISVATENGGFTSPELAKSFDFSAEERIYKWWESQGYFKPSFDRGSDPFVISMPPPNVTGY LHMGHAIFVTLEDIMVRYNRMKGRPTLWIPGSDHAGIATQLVVEKMLQSEGLKRTEVGRDKFTERVWEWKEKHGATITNQIKRLGASCDWTREHFTLDEQ LSRLWRLVATVASAQNDDRYSKYIGQMAIVPMTYGRHVPIIADKYVDKEFGTGVLKISPGHDHNDYVLARKLGLPILNVMNKDGTLNDVAGLYSGLDRFE ARKQLWSELEETNLAVKKEAHTLRVPRSQRGGEIIEPLVSKQWFVNMESLAEKALHVVQNGEITVMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY VEGRSAEDDYIVARNESEALEKAREKYGERVEIYQDPDVLDTWFSSSLWPFSTLGWPDESSEDYTRFYPTTTLETGHDILFFWVARMVMMGIELTGRVPF SNIYLHGLIRDAQGRKMSKTLGNVIDPLDTIKEYGTDALRFTLALGTAGQDLNLSMERLTANKAFTNKLWNAGKFLLQNLPSQTDSFAWEAIVAHKFDAE KSLLRLPLPECWVVSKLHSLIDTVTASYDKYFFGDVGREIYDFFWSDFADWYIEASKARLYQSGEDSTASVAQAVLLYVFENILKMLHPFMPFVTEELWQ ALPDRKQALIISSWPQTALPRHASSIRQFENFQALTRAIRNVRAEYSVEPAKRISASIVANKDVVQYISNEKEVLALLSRLDLQNVHFSTSPSEDANKSV HIVASEGLEAYLPLADMVDISAEVERLSKRLSKMQTEYDSLVARLSSSKFAEKAPEDVVRGVREKAAEAEEKINLTKNRLDFLRSSALIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	1.0	0.9518
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	2.4	0.9515
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	4.0	0.9364
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	4.2	0.9394
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	5.5	0.9398
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	5.9	0.9373
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	6.0	0.9414
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	7.2	0.9193
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	7.3	0.9331
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	7.5	0.9112

Compare expression of checked genes

Lus10009139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.