Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64820 481 / 3e-167 MATE efflux family protein (.1) AT1G66780 452 / 9e-156 MATE efflux family protein (.1) AT2G04100 451 / 2e-155 MATE efflux family protein (.1) AT1G66760 441 / 2e-151 MATE efflux family protein (.1.2) AT2G04090 439 / 5e-151 MATE efflux family protein (.1) AT2G04040 437 / 3e-150 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04080 434 / 3e-149 MATE efflux family protein (.1) AT2G04050 434 / 4e-149 MATE efflux family protein (.1) AT2G04070 432 / 2e-148 MATE efflux family protein (.1) AT1G71140 424 / 7e-145 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028504 [exp] 810 / 0 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 451 / 3e-155 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 439 / 1e-150 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10042732 [exp] 434 / 7e-149 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 429 / 6e-147 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10006171 [exp] 418 / 9e-141 AT1G71140 452 / 5e-154 MATE efflux family protein (.1) Lus10018135 [exp] 406 / 4e-138 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 406 / 2e-132 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 393 / 3e-132 AT1G71140 528 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G120600 [exp] 536 / 0 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094900 [exp] 530 / 0 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120400 [exp] 514 / 3e-180 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.017G120500 [exp] 514 / 3e-180 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094800 [exp] 512 / 4e-180 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.010G116900 [exp] 466 / 3e-161 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 446 / 7e-154 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.010G117000 [exp] 446 / 5e-153 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 444 / 2e-152 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G094700 [exp] 417 / 2e-142 AT2G04100 425 / 3e-145 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10009140 pacid=23150027 polypeptide=Lus10009140 locus=Lus10009140.g ID=Lus10009140.BGIv1.0 annot-version=v1.0 ATGGAGAATGATGTTCCACTCCTAGAAAAGAAGGTATTAGATGAAGCAGAGGTTGTCACCTTTAAGAATCCAAATAGAAGAGGAGAAAATGTGTTGGTGG AACAGCTGAAGAAGGTGATCAAAATGGCTGCTCCCATGGTAGTAGTCTCCGTCGCTCAGTACCTCGTCCAGGTCGTCTCCTTGATCATGTCCGGCCACCT CGGAGAGCTCTCCCTCTCTGCCGTCGCCGTCGCCACCTCCTTCACCAACGTCACTGGCTTCGCCCTCCTCTTTGGGCTAGCGGGAGCGTTGGAGACGCTA TGCGGGCAAGCGTACGGAGCAGAGCAGTACTGGAAATGCGGGACATACACATATTCGGCCATAATCACCCTCCTCCCGATCTGCATCCCCATTTCAATCC TCTGGTTCTTCCTCGACAAGCTCCTCGTATCAATCGGTCAAGACCCCGACATCTCCCGAGAGGCCTGTCAATACGCGATAAGCTTGATCCCGGCTCTGTT CGGGGACGCCATATTGCAGTCTCTAAACAGATACTTCCAATCTCAAGGATTGACTCTGCCCATGCTTTTGAGCTCCGTCGCTGCCCTATGTGTTCATGTT CCCCTGTGTTGGGCCCTGTCTTATAAGTGTGGGCTGGGGAATGTTGGGGCTGCTTTTTCTATTGGGCTGGCTTATTGGTTCAACGCCCTTTTGCTTGTCT GTTACATGAGATGGTCTTCCTACTGTGAGAAGACACGTGTCATGTGTTGGGATGATGTGATTTCCAGCGTTGGGGAGTTTTGGAGATTCGCCGTTCCCTC TGCTGTCATGGTCTGTTTGGAATGGTGGACGTTTGAGCTGCTTGTGCTACTGGCTGGGTTGCTACCGAATGCAGCTCTGGAAACATCAGTTCTTTCCATT TGCCTAACGACTACATCGCTTCACTACTACGTACAATACGGCATCGGAGCTGCAGCCAGCACCGGAGTGTCGAACGAGCTGGGAGCAGGTAACCCAGAAA AAGCCAAAGCAGTGATAAAATCGGCGGTGGCGATTTCGATAACGGAGGCCGTCGTCGTCAGCACAACGCTGTTCTGCTGCCGGAGCTTCTTCGGCTACGT ATTCAGCAACGAAAGAGAAGTGGTGGAATACGTGAGTGACGTGGCTCCTCTGCTCTGCCTGTCCGTCATTGTGGACAGCTCCCTTGCAGTACTCTCCGGA GTGGCTCGCGGGAGCGGGTGGCAGCATATAGGTGCGTACGTAAATCTAGGCGCGTACTATGGGATCGGGATGCCCGTGGCGGTGGTGATGTGCTTCGTAG TGCGTCTCGACGGGGAAGGGCTCTGGATTGGGATACTCACGGCGTCTACTCTTCAGGCGTTTTTGTTCGCTTCCGTTACTGTTTTCACTAATTGGGATCA ACAGGCGAGCAAGGCTAGGGAGAGGATATTTGAAGGAAGGCGGTCGTCGTCTCAAACAGTTTTGCCTGCTTGA
AA sequence Show only first row Show all	>Lus10009140 pacid=23150027 polypeptide=Lus10009140 locus=Lus10009140.g ID=Lus10009140.BGIv1.0 annot-version=v1.0 MENDVPLLEKKVLDEAEVVTFKNPNRRGENVLVEQLKKVIKMAAPMVVVSVAQYLVQVVSLIMSGHLGELSLSAVAVATSFTNVTGFALLFGLAGALETL CGQAYGAEQYWKCGTYTYSAIITLLPICIPISILWFFLDKLLVSIGQDPDISREACQYAISLIPALFGDAILQSLNRYFQSQGLTLPMLLSSVAALCVHV PLCWALSYKCGLGNVGAAFSIGLAYWFNALLLVCYMRWSSYCEKTRVMCWDDVISSVGEFWRFAVPSAVMVCLEWWTFELLVLLAGLLPNAALETSVLSI CLTTTSLHYYVQYGIGAAASTGVSNELGAGNPEKAKAVIKSAVAISITEAVVVSTTLFCCRSFFGYVFSNEREVVEYVSDVAPLLCLSVIVDSSLAVLSG VARGSGWQHIGAYVNLGAYYGIGMPVAVVMCFVVRLDGEGLWIGILTASTLQAFLFASVTVFTNWDQQASKARERIFEGRRSSSQTVLPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64820			MATE efflux family protein (.1...		Lus10009140 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	5.2	0.9448
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10009334 [exp]	7.9	0.9396
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	10.1	0.9267
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	10.5	0.9424
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	10.6	0.9425
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	14.5	0.9415
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	14.7	0.9412
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	19.2	0.9408
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	19.9	0.9376
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	20.1	0.9226

Compare expression of checked genes

Lus10009140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.