Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35350 139 / 2e-41 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G50260 140 / 5e-41 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT5G45890 138 / 1e-40 SAG12 senescence-associated gene 12 (.1) AT3G19390 140 / 2e-40 Granulin repeat cysteine protease family protein (.1) AT3G48340 138 / 2e-40 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G48350 137 / 7e-40 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT2G27420 136 / 1e-39 Cysteine proteinases superfamily protein (.1) AT1G20850 132 / 4e-38 XCP2 xylem cysteine peptidase 2 (.1) AT4G36880 132 / 4e-38 CP1 cysteine proteinase1 (.1) AT1G09850 132 / 1e-37 XBCP3 xylem bark cysteine peptidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028501 [exp] 226 / 5e-75 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 227 / 6e-75 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10028502 [exp] 226 / 1e-74 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10026073 [exp] 224 / 4e-74 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10020722 [exp] 224 / 7e-74 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 223 / 1e-73 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 223 / 1e-73 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 223 / 2e-73 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 222 / 4e-73 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 203 / 2e-65 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 202 / 2e-65 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 200 / 2e-64 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 198 / 8e-64 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 198 / 1e-63 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 198 / 1e-63 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 189 / 1e-60 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 176 / 7e-56 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 174 / 1e-54 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 171 / 2e-53 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10009144 pacid=23150034 polypeptide=Lus10009144 locus=Lus10009144.g ID=Lus10009144.BGIv1.0 annot-version=v1.0 ATGTGCTCTCCGCAACATGGACCTTTTAGGTACGAAAATGTGAGTGCGGTCCCCACGACCATGGACTGGAGGAAGAAGGGAGCAGTGACCCCTATCAAAG ACCAAGGTCAATGCGGAAGCTGCTGGGCATTTTCCGCAGTAGGAGCAATGGAAGGAATCCACCAGCTCAGTACTGGCAAATTGGCGTCCCTTTCGGAGCA AGAATTGGTTGACTGCGACACCAAGGGAGAGGACCAAGGATGTGGCGGCGGGTTGATGGATGATGCGTTCAAGTTCATCATTCAAAACAAGGGATTGACC ACCGAGACCAACTACCTTACGACGCCGCCGATGGAACCTGTAATGCCAACAAAGAAGGAAGCAGTGCGGCCAAGATTACCGGGTACTAAGATGTGCCAGC CAACAACGAAGCCGCATTGA
AA sequence Show only first row Show all	>Lus10009144 pacid=23150034 polypeptide=Lus10009144 locus=Lus10009144.g ID=Lus10009144.BGIv1.0 annot-version=v1.0 MCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLASLSEQELVDCDTKGEDQGCGGGLMDDAFKFIIQNKGLT TETNYLTTPPMEPVMPTKKEAVRPRLPGTKMCQPTTKPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10009144 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002392 [exp]	6.6	0.6674
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	10.8	0.6232
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	16.4	0.6267
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	17.5	0.6132
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	19.7	0.6361
					Lus10027052 [exp]	23.9	0.5678
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	26.3	0.6015
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	30.6	0.5874
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10030567 [exp]	33.6	0.5787
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002398 [exp]	35.4	0.5993

Compare expression of checked genes

Lus10009144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.