Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 383 / 6e-133 SAG12 senescence-associated gene 12 (.1) AT3G19390 357 / 2e-121 Granulin repeat cysteine protease family protein (.1) AT3G48340 343 / 3e-117 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G50260 339 / 1e-115 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT2G27420 333 / 2e-113 Cysteine proteinases superfamily protein (.1) AT4G35350 326 / 1e-110 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G49340 326 / 1e-110 Cysteine proteinases superfamily protein (.1) AT3G19400 325 / 5e-110 Cysteine proteinases superfamily protein (.1.2) AT5G43060 326 / 5e-109 Granulin repeat cysteine protease family protein (.1) AT1G20850 322 / 5e-109 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028502 [exp] 667 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10029799 [exp] 666 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10020722 [exp] 659 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 642 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 641 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 640 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 636 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10042295 [exp] 635 / 0 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10003275 [exp] 634 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 532 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 531 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 528 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 528 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 527 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 526 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 471 / 1e-167 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 468 / 2e-167 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 456 / 2e-162 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 448 / 8e-159 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10009145 pacid=23150044 polypeptide=Lus10009145 locus=Lus10009145.g ID=Lus10009145.BGIv1.0 annot-version=v1.0 ATGGCTTTGAACAACAAGTTCATTCTCCTGGCCTCCATCTTTATATTGGGAGGAGCTCTAGTTTCTCTGGCCACGGCGCGCTATACCCTTCCTGAAGCTG CCGTACGCCTCAGGCATGAGCAGTGGATGACTCGTTACGGCCGAGTCTACAATAGTCCTAGTGAAAAGGAGACTCGATACCAGATATTCAAAGACAACGT AGCCTTCATCGACTCTTCCAACGCTGCTGGAGGCAAGTCTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTGACAAACGACGAGTTCAAAGCCTCTAGA AACGGGTTCAAGGGACACATGTGCTCCCCGCAACATGGACCTTTTAGGTATGAAAATGTGAGTGCGGTCCCGACGACCATGGACTGGAGGAAGAAGGGAG CAGTGACCCCTATCAAAGACCAAGGTCAATGCGGAAGCTGCTGGGCATTTTCCGCAGTAGGAGCAATGGAAGGAATCCACCAGCTCAGTACCGGAAAATT GGTGTCCCTTTCGGAGCAAGAATTGGTTGACTGCGACACCAAGGGAGAGGACCAAGGATGTGGCGGCGGGTTGATGGATGATGCGTTCAAGTTCATCATT CAAAACAAGGGATTGACCACCGAGACCAACTACCCTTACGACGCTGCCTACCCTTACGACGCTGCCGATGGAACCTGTAATGCTAACAAAGAAGGAAGCA GTGCGGCCAAGATTACCGGGTACGAAGATGTGCCAGCCAACAACGAAGCCGCATTGATGAAGGCAGTGGCGAGCCAACCGATTTCGGTGGCCATTGATGC AGGGGATTCATCGTTCCAATTCTACTCGAGTGGGATTTTTACAGGAGAATGCGGGACTGAGCTAGACCATGGAGTGACGGCAGTTGGGTACGGTGAGAGC GGTGGGAAGAAGTACTGGTTGGTGAAGAATTCGTGGGGAGCACAGTGGGGCGAAGCCGGATACATTCGAATGCAGAAAGACGTTACCGCTAAAGAAGGCC TCTGCGGAATCGCTATGCAGGCTTCCTATCCTACTGCCTAA
AA sequence Show only first row Show all	>Lus10009145 pacid=23150044 polypeptide=Lus10009145 locus=Lus10009145.g ID=Lus10009145.BGIv1.0 annot-version=v1.0 MALNNKFILLASIFILGGALVSLATARYTLPEAAVRLRHEQWMTRYGRVYNSPSEKETRYQIFKDNVAFIDSSNAAGGKSYKLGVNQFADLTNDEFKASR NGFKGHMCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCGGGLMDDAFKFII QNKGLTTETNYPYDAAYPYDAADGTCNANKEGSSAAKITGYEDVPANNEAALMKAVASQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGES GGKKYWLVKNSWGAQWGEAGYIRMQKDVTAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10009145 [exp]	0	1
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	11.2	0.6548
					Lus10018591 [exp]	14.3	0.6131
					Lus10022865 [exp]	15.7	0.6304
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	30.8	0.5526
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	33.5	0.5686
					Lus10028460 [exp]	35.7	0.6088
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	50.9	0.5467
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	69.5	0.5116
AT2G23770			protein kinase family protein ...		Lus10032735 [exp]	75.3	0.5189
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Lus10020334 [exp]	76.2	0.4791

Compare expression of checked genes

Lus10009145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.