Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02580 440 / 1e-157 BUL1, DWF7, STE1 DWARF 7, BOULE 1, sterol 1 (.1) AT3G02590 408 / 5e-145 Fatty acid hydroxylase superfamily protein (.1) AT1G69640 47 / 6e-06 SBH1 sphingoid base hydroxylase 1 (.1) AT2G29390 43 / 7e-05 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 42 / 0.0002 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028498 [exp] 321 / 4e-112 AT3G02580 236 / 1e-78 DWARF 7, BOULE 1, sterol 1 (.1) Lus10016492 [exp] 46 / 1e-05 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 46 / 2e-05 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10001556 [exp] 42 / 0.0002 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097500 [exp] 455 / 8e-164 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1) Potri.017G116600 [exp] 448 / 5e-161 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.009G037400 [exp] 42 / 0.0002 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G245300 [exp] 41 / 0.0005 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.014G069500 [exp] 41 / 0.0006 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10009147 pacid=23150036 polypeptide=Lus10009147 locus=Lus10009147.g ID=Lus10009147.BGIv1.0 annot-version=v1.0 ATGACGGCGGTGGATTATCTGCAGCAATTCGTGGACGACACCACATTCTTCAACAACATAGTGCTGGGCAATCTGCTGCCGTCTTCCTGGTGGAAGGATC CACTTCCTCACTTCCTCCAGACCTGGCTCCGCAATTACATCGCCGGCAATATCCTCTACCTCGTTTCCGGCTTCCTCTGGTGCTTCTACATCTACTACCT CAAGCGCAACGTCTTCCTTCCCAAAGATGCTATACCTTCCAATGACGCGATGCTCAAGCAAATTTATGTTGCCATGAAAGCAATGCCATGGTACACTCTT CTACCAACTGTTTCCGAGTACATGGTTGAGAATGGCTGGACTAAGTGCTATCCCGGAATACTTGAGTTCGGTTTGGTTCCGTACCTTGCGTACATGGCGA TTTACCTCGTTTTCGTTGAGTTTGGGATTTACTGGATGCACAGGGAGTTGCACGATATAAAACCTCTGTACAAGTATCTTCATGCAACTCATCATATTTA TAACAAGCAGAATACTCTGTCTCCATTTGCTGGCTTGGCCTTCAATCCAATAGATGGAATCCTTCAAGCACTGCCACATGTACTGGCTCTCTTCATAATC CCAACCCATTTCAGGACCCATATAGCTTTCTTGTTCCTGGAGGCCATTTGGACTGCGAATATTCACGACTGCATCCACGGAAAGCTCTGGCCGGTGATGG GTGCTGGCTACCACACCATCCACCACACTACCTATCGTCACAACTATGGCCATTACACCATTATCATGGATTGGCTGCTTGGAACTCTCCGTGACCCCGA CGAAGAAGACGCGTCATTGAAGGTGAAATGA
AA sequence Show only first row Show all	>Lus10009147 pacid=23150036 polypeptide=Lus10009147 locus=Lus10009147.g ID=Lus10009147.BGIv1.0 annot-version=v1.0 MTAVDYLQQFVDDTTFFNNIVLGNLLPSSWWKDPLPHFLQTWLRNYIAGNILYLVSGFLWCFYIYYLKRNVFLPKDAIPSNDAMLKQIYVAMKAMPWYTL LPTVSEYMVENGWTKCYPGILEFGLVPYLAYMAIYLVFVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFNPIDGILQALPHVLALFII PTHFRTHIAFLFLEAIWTANIHDCIHGKLWPVMGAGYHTIHHTTYRHNYGHYTIIMDWLLGTLRDPDEEDASLKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	0	1
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	3.2	0.8325
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	3.5	0.8175
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10002678 [exp]	9.8	0.7530
AT5G62960			unknown protein		Lus10014556 [exp]	10.1	0.7580
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	10.4	0.7820
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	14.0	0.7573
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10004936 [exp]	14.0	0.7675
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	17.3	0.7656
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030196 [exp]	17.5	0.7342
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	23.2	0.7078

Compare expression of checked genes

Lus10009147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.