Plant FIBer expression Database

Lus10009148 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66890 54 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028496
[exp]
214 / 5e-72 AT5G16200 84 / 9e-21 50S ribosomal protein-related (.1)
Lus10034103
[exp]
44 / 1e-05 AT1G68430 68 / 6e-15 unknown protein
Lus10003042
[exp]
39 / 0.001 AT1G68430 66 / 3e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G117866
[exp]
76 / 6e-18 AT5G16200 72 / 1e-16 50S ribosomal protein-related (.1)
Potri.004G097200
[exp]
68 / 1e-14 AT1G66890 / unknown protein
Potri.010G121300
[exp]
56 / 3e-10 AT1G68430 79 / 5e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10009148 pacid=23150067 polypeptide=Lus10009148 locus=Lus10009148.g ID=Lus10009148.BGIv1.0 annot-version=v1.0
ATGGCCACGCTGCAGAAAGTCAAGCATTTCGCAACTCAGTGCGGAGCTGGGAATCCGACGCTGAGCCCTACCACCAGCCCAGTATTCCACCTCCGGCGCC
GCCGCCGCAACACCCTTCGTATGCTGCTCTCCCGCGGTGGCACTCCAGACCGCCACCGCCGGGCTATGGCGATGTTCGATTCTCCGCCCCTAAATGGCTG
CGACAATCAGATCGTCCAGCAGCGGGATCTTCCGGCAGCAGAGTCGCACAGGGATAGAAGGAGATTGAAGGATTTGTTCGTCTCTTCTTCTCCGCCGTTT
GATGATCATCGGAAGCAGAATCGGGGCTGCGATGAGGTCAGGCTGTTGACTGACGGCGGTGCTGGGAGTAATAGTTGCGGCGGTGGCGGTGGAGGAGGAG
TAGGAGGAGGATTGTCGGGTCGTCGGAGCGGGCTTAGGACGGCGGCGGCGCGATTTCGGTGTAGGTTAATGAGGAGAGCTTGGCGGCCTGTACTGGTCAC
CATCCCTGAATAG
AA sequence
>Lus10009148 pacid=23150067 polypeptide=Lus10009148 locus=Lus10009148.g ID=Lus10009148.BGIv1.0 annot-version=v1.0
MATLQKVKHFATQCGAGNPTLSPTTSPVFHLRRRRRNTLRMLLSRGGTPDRHRRAMAMFDSPPLNGCDNQIVQQRDLPAAESHRDRRRLKDLFVSSSPPF
DDHRKQNRGCDEVRLLTDGGAGSNSCGGGGGGGVGGGLSGRRSGLRTAAARFRCRLMRRAWRPVLVTIPE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16200 50S ribosomal protein-related ... Lus10009148
[exp]
0 1
AT5G61510 GroES-like zinc-binding alcoho... Lus10009658
[exp]
9.7 0.8909
AT1G66880 Protein kinase superfamily pro... Lus10009150
[exp]
17.2 0.8283
AT1G04760 ATVAMP726 vesicle-associated membrane pr... Lus10011870
[exp]
24.0 0.8508
AT2G14440 Leucine-rich repeat protein ki... Lus10041860
[exp]
27.0 0.8746
AT1G27450 APRT, ATAPT1, A... ARABIDOPSIS THALIANA ADENINE P... Lus10007757
[exp]
30.2 0.8645
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Lus10008818
[exp]
30.5 0.8514
AT1G01490 Heavy metal transport/detoxifi... Lus10036395
[exp]
32.7 0.8574
AT4G40020 Myosin heavy chain-related pro... Lus10000283
[exp]
33.8 0.8240
AT3G13840 GRAS GRAS family transcription fact... Lus10000532
[exp]
37.0 0.8520
AT3G02875 ILR1 IAA-LEUCINE RESISTANT 1, Pepti... Lus10021321
[exp]
42.1 0.8576

Lus10009148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.