Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38210 343 / 6e-112 Protein kinase family protein (.1) AT1G18390 339 / 8e-111 Protein kinase superfamily protein (.1.2) AT1G66880 348 / 7e-109 Protein kinase superfamily protein (.1) AT1G25390 329 / 2e-107 Protein kinase superfamily protein (.1) AT2G23450 229 / 4e-68 Protein kinase superfamily protein (.1.2) AT1G69910 215 / 2e-63 Protein kinase superfamily protein (.1) AT5G02070 214 / 4e-63 Protein kinase family protein (.1) AT3G25490 208 / 7e-63 Protein kinase family protein (.1) AT5G66790 212 / 1e-62 Protein kinase superfamily protein (.1) AT1G16150 212 / 2e-61 WAKL4 wall associated kinase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028494 [exp] 669 / 0 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10022432 [exp] 346 / 4e-113 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 346 / 5e-113 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 339 / 5e-111 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 230 / 3e-69 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10032741 [exp] 220 / 1e-64 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 220 / 1e-64 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 217 / 4e-64 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10019657 [exp] 214 / 5e-63 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097100 [exp] 401 / 3e-135 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.004G096550 [exp] 387 / 4e-129 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 385 / 6e-128 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 383 / 4e-127 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 375 / 2e-124 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.010G121100 [exp] 356 / 1e-117 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.012G054725 [exp] 353 / 3e-116 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 350 / 3e-114 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 340 / 3e-111 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G044750 [exp] 338 / 2e-110 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10009150 pacid=23150033 polypeptide=Lus10009150 locus=Lus10009150.g ID=Lus10009150.BGIv1.0 annot-version=v1.0 ATGGTGGGTGAGGTCCCCGATGTCGTTGAGTCGATTCAGTCGAGATGTGGTAGTTCTGTTACAGTACCGATTTCGGGAGCATACTCTGGGATTATGAGTA ACGGCTCTTTGCTTGCCCCTGCTTTGAGAGCTGGGTTTAATGTGAATTATAGTGATCCTATGGATGATGATTGCTTCAATTGCTTTTTTGAGAGGCATGG ATACTGTGGGTTCGATGATGACTCTGGTGAATCTATCTGTATCTGTAGGGATCGGCTTTGTCCAGGTGTGTCGGCAGGAGCAGGAGTTGTTGCAGCGATC GGAGTATGTCTCTGGTTCTTGATTTCAAGGCAGAGGAAAAGAAAAGCAGCACAGATCATGAGCAAAGATTCCTCCACACCACCTTCTTCCACAGCCAAAA CCCGAACCACCCGCACAACCAACAAATGCTCCAACACTACTTCTTCATCCTACACCACTTCAATGTCCGACATCGAAAAGGGTGGACCCGGCGGCAGCAC CTACTTCGGCGTCCAGGTCTTCAGCTACGACGAACTCGACGAAGCCACCGAAAGCTTCGACGCTTCCAAAGAGCTGGGAGACGGCGGCTTCGGCACCGTC TACTACGGCGAGCTCGAAGATGGCAGAGCCGTCGCCGTGAAGAGACTCTACGAGAACAACATGAGAAGAACAGAGCAGTTCATGAACGAGATCGAAATAC TCGCAAAACTCCGCCATAAGAATTTAGTCACTCTGTACGGCTGCACCTCCCGCCATAGCCGGGAGCTTGTCCTTGTCTACGAGTACATCTCCAACGGCAC CGTAGCAGATCACCTCCACGGCAACCGACGCGAATCTGGCTCGAATATGATGACGTGGCGGGTAAGGATGAACATCGCAATCCAGACGGCCGACGCGCTG TCGTTCCTCCACGCGTCTGACGTCATCCACCGAGACGTGAAAACGAACAACGTCCTGCTCGACGAGAACTTCAACGTGAAAGTTGCTGACTTCGGGCTGT CCAGGCTGTTCCCGCTCCACGTCACCCACGTCTCGACCGCTCCACAAGGGACACCTGGCTACGTGGACCCGGAGTACTACCAATGCTACCAGCTGACGGA CAAGAGCGACGTGTACAGCTTCGGAGTGGTGCTGATGGAGCTGATAACGTCGCTGCAGGCGGTGGCAGAGTGGGAGAGAGCGCGGGCACCCCCCGCCACG ACATCAATTTGGCCAACATGGCGGTGA
AA sequence Show only first row Show all	>Lus10009150 pacid=23150033 polypeptide=Lus10009150 locus=Lus10009150.g ID=Lus10009150.BGIv1.0 annot-version=v1.0 MVGEVPDVVESIQSRCGSSVTVPISGAYSGIMSNGSLLAPALRAGFNVNYSDPMDDDCFNCFFERHGYCGFDDDSGESICICRDRLCPGVSAGAGVVAAI GVCLWFLISRQRKRKAAQIMSKDSSTPPSSTAKTRTTRTTNKCSNTTSSSYTTSMSDIEKGGPGGSTYFGVQVFSYDELDEATESFDASKELGDGGFGTV YYGELEDGRAVAVKRLYENNMRRTEQFMNEIEILAKLRHKNLVTLYGCTSRHSRELVLVYEYISNGTVADHLHGNRRESGSNMMTWRVRMNIAIQTADAL SFLHASDVIHRDVKTNNVLLDENFNVKVADFGLSRLFPLHVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLMELITSLQAVAEWERARAPPAT TSIWPTWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	0	1
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	1.0	0.8976
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	4.2	0.8313
AT5G16200			50S ribosomal protein-related ...		Lus10009148 [exp]	17.2	0.8283
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10007841 [exp]	18.7	0.8267
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	19.8	0.8400
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10027004 [exp]	36.8	0.8254
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	58.6	0.7865
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10004226 [exp]	70.1	0.7609
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	84.5	0.7957
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037785 [exp]	101.5	0.7999

Compare expression of checked genes

Lus10009150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.