Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 127 / 7e-32 Protein kinase superfamily protein (.1) AT1G67000 114 / 4e-27 Protein kinase superfamily protein (.1) AT1G66930 107 / 6e-25 Protein kinase superfamily protein (.1) AT1G66880 102 / 3e-23 Protein kinase superfamily protein (.1) AT1G66910 95 / 6e-21 Protein kinase superfamily protein (.1) AT5G38210 88 / 1e-18 Protein kinase family protein (.1) AT1G18390 83 / 7e-17 Protein kinase superfamily protein (.1.2) AT1G66920 82 / 1e-16 Protein kinase superfamily protein (.1.2) AT1G66940 80 / 1e-16 protein kinase-related (.1.2.3) AT1G67025 73 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028494 [exp] 456 / 4e-154 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10039725 [exp] 334 / 9e-109 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10016737 [exp] 71 / 5e-13 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 64 / 9e-11 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025553 [exp] 44 / 0.0003 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118100 [exp] 186 / 2e-52 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G117340 [exp] 184 / 4e-52 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1) Potri.017G116900 [exp] 169 / 2e-46 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.017G118250 [exp] 167 / 7e-46 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.017G117120 [exp] 166 / 2e-45 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.004G096900 [exp] 164 / 1e-44 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.004G096675 [exp] 153 / 6e-44 AT5G38260 99 / 1e-23 Protein kinase superfamily protein (.1) Potri.017G117400 [exp] 152 / 2e-43 AT1G66930 105 / 2e-25 Protein kinase superfamily protein (.1) Potri.017G116955 [exp] 124 / 9e-31 AT1G66920 389 / 5e-128 Protein kinase superfamily protein (.1.2) Potri.004G096550 [exp] 114 / 2e-27 AT5G38210 594 / 0.0 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009151 pacid=23150011 polypeptide=Lus10009151 locus=Lus10009151.g ID=Lus10009151.BGIv1.0 annot-version=v1.0 ATGATCTTCCGTTATCCTGCATCATCCTTTTTCACCTGCATTCTTATCTTTTCAATCTCAATTACAGTCAGTAGTAGCTCCGCCCAAGACGATGAAGACT CCAGATACTTGGATTGCAGCAGGCAGATCGAATGCGGAGGCCTGTCTTTTGTATTCCCCTTTTGGGGACCCGGTCGCCCTGATTATTGCGGCCTCCCGGA GTTTGAACTCACTTGCGCCGACCGTACTCCCACCATCTCCATCCAAGGCCTCACCTACCGGATACTCGACATCAACTATTCCTCCCAGATCCTGAGGCTT CTGCAGACCGATTACTCCCAAAATCTCTGTCCTGCTAATCCCAGGAATGTTACCGATGTTGAGAATCTATTCCGTTTTACGGAGGACACTCAATTCGTCA ATCTTTACTATGGTTGCTCTTCCGGATTTCAACTCCCCCTGAATTTGGAGAGCTTCAGTTGCCCCAGCCACCCGTCAGGGCAATACTTTTTGCCGACCGG GAACTGGGCCTGGTTGGGACTATGCAGCAATCAAGTTAGGGTTCCGGTAAATCAAACGGCTGGGGAGTGGCTGCAGAGGGAACCGACGGGTACAAGGTTA ACAGAGATAATTGATCAAGGTTTTGGGATGCGGTGGACATCGAACGACAGTTTGTGTGCCACTTGTAGCGCCTCTGGTGGAAAGTGCGGGTTCAATAATA CGACGAGTTTGTTCACTTGTTTTTGCGTTGATCAGCCGTATGGAACGCGATGCGAGGCTGCTGCTACTGGTCCGACGGCTCAACCTGGAATGTACCCTCT CCTCCTCCTCCTCCTTTTCTGTTCATCCGTCGCCGCCTCCTTACCGGCAGACGGCAATCTCTCCGGCTGCAACAACACATTCTCCTGCGGCAACATCACA AACATCGAATTCCCTTTCACCGGCGGTCCACGTCCCCACTACTGCGGCTTACCCGGTTTCAACCTCACATGTCAAGACGACTCCATCACTCTCCTCACCA TCAACTCCCTCAACTACACCGTCCTCCACATCGACGGCTCCGATTCAACCTTAACCCTCTCCCGCTCCGACTTGTCCTCCTCCTCCGCCGCGGGGTGCAC CAGCCTCCACCGCAACTCAACTTTTTCAAACTCCAACTTCACCCTCTCCCCTAACTGTTGGGGCGCAGCGGACGAGAATAGAGTAAATATATTGCACTAA
AA sequence Show only first row Show all	>Lus10009151 pacid=23150011 polypeptide=Lus10009151 locus=Lus10009151.g ID=Lus10009151.BGIv1.0 annot-version=v1.0 MIFRYPASSFFTCILIFSISITVSSSSAQDDEDSRYLDCSRQIECGGLSFVFPFWGPGRPDYCGLPEFELTCADRTPTISIQGLTYRILDINYSSQILRL LQTDYSQNLCPANPRNVTDVENLFRFTEDTQFVNLYYGCSSGFQLPLNLESFSCPSHPSGQYFLPTGNWAWLGLCSNQVRVPVNQTAGEWLQREPTGTRL TEIIDQGFGMRWTSNDSLCATCSASGGKCGFNNTTSLFTCFCVDQPYGTRCEAAATGPTAQPGMYPLLLLLLFCSSVAASLPADGNLSGCNNTFSCGNIT NIEFPFTGGPRPHYCGLPGFNLTCQDDSITLLTINSLNYTVLHIDGSDSTLTLSRSDLSSSSAAGCTSLHRNSTFSNSNFTLSPNCWGAADENRVNILH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66880			Protein kinase superfamily pro...		Lus10009151 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	4.4	0.9412
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	5.7	0.9339
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	6.3	0.9287
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	9.3	0.9345
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	9.4	0.9393
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	12.0	0.9246
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	14.1	0.9281
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	19.0	0.9168
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	25.3	0.9080
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	25.3	0.9231

Compare expression of checked genes

Lus10009151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.