Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38200 563 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G66860 542 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G15040 475 / 3e-167 Class I glutamine amidotransferase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028493 [exp] 770 / 0 AT5G38200 590 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10016700 [exp] 571 / 0 AT5G38200 621 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10035996 [exp] 571 / 0 AT5G38200 625 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10039726 [exp] 155 / 3e-45 AT5G38200 107 / 5e-28 Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118551 [exp] 597 / 0 AT5G38200 637 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.010G120600 [exp] 582 / 0 AT5G38200 657 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF07722 [flax] [poplar] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Lus10009152 pacid=23150032 polypeptide=Lus10009152 locus=Lus10009152.g ID=Lus10009152.BGIv1.0 annot-version=v1.0 ATGGCTGCCGACCTCTCCGTCATCCTGCCACGTGTCCTCATCGTCTCCAGGCGCAGCGTCCGCAAGAACAAGTTCGTCGATTTCGTCGGCGAGTACCATC TGGATCTGATAGTCGGATACGGCGCCGTCCCGGTGATTGTGCCACGTGTCAGCGGCGTCCACCTCCTCCTCGAAAGCTTCGAGCCCATCCACGGCGTCCT CCTCTGCGAAGGCGAAGACATCGACCCTTCCCTCTACCAAACACCTGACGCGGGCCCCACCGCTCTCTCGCCGGAGGAGCTCGACGAGATCAGGAGGCTC CACGTCAGCGACACCGCAATCGACAGGGAGAAAGACTCCATCGAGCTCCGCCTCGCCAAGCTATGCCTCGAGCGCAACATTCCCTTCCTGGGAATCTGCC GTGGCTCCCAGGTCCTCAACGTGGCATGCGGTGGGACCCTCTACCAAGACGTGGACCACGAGCTAATCAATTCAAAGATGACTAGGCACATGGATTACGG CAATTACGACGGCCACAGGCATCCGATTAACGTGGTGGAAGGGACGCCGTTGCATGAGTGGTTTAGGGATACGTTCGAGGAGGAGGGTAGAATGGGGATT TCGGTGAACAGCTATCATCACCAAGGTGTCAAGAGGCTGGCTCAGAGATTTGTCCCCATGGCTTTCGCTCCGGACGGGTTGGTTGAAGGGTTCTACGACC CGGATGCTTATAACCCGGAGGAGGGTAAGTTCATAATGGGCCTTCAGTTTCATCCCGAGCGGATGCGGGACCCCGATACTGACCGGTTCGATTACCCCGG TTGCCCAAGGGCTTATCAGGAATTCGTGAAGGCCGTGAGAGCGTATCAGAAGAGGCTTGTAAGTACGGCGATGACAAAGCCGGTGAGAGTAGTGGATGAA GAAGTGGAGAAGAAGACGAAAGTAATAGTAAGGAGTTTCACCATTGCTAGGGATATGTATTATTCAGCAGGGGATATACAGCCATCATCAAGAGAATCAG AGTTGAAACCTGGTGCAGAATTCCTTGAGTCAAATAGAGCGCTGAGTGTGCAGCAAGAGAAGAGGCTGAAGCAGATGGGAGCGACGGTGAGGAACGCAGG TTGTTACATAGAGAAAGTGAAACGTAACGAGGAAAGGGAGAAAGTGGCGAGAAGTGTGATGGAGAAAATGTCGGTGGAACAGCTGTCTGAGCTTTTGTCT TTCTACCGAAAGATGTCCCATATTTGCTCCGACGTTTTGGAAACAAAGCTTCCTCATCTAGGCGGCGTTGCCTTGGAAATTGGGATGGCGACGTACGACT AG
AA sequence Show only first row Show all	>Lus10009152 pacid=23150032 polypeptide=Lus10009152 locus=Lus10009152.g ID=Lus10009152.BGIv1.0 annot-version=v1.0 MAADLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVSGVHLLLESFEPIHGVLLCEGEDIDPSLYQTPDAGPTALSPEELDEIRRL HVSDTAIDREKDSIELRLAKLCLERNIPFLGICRGSQVLNVACGGTLYQDVDHELINSKMTRHMDYGNYDGHRHPINVVEGTPLHEWFRDTFEEEGRMGI SVNSYHHQGVKRLAQRFVPMAFAPDGLVEGFYDPDAYNPEEGKFIMGLQFHPERMRDPDTDRFDYPGCPRAYQEFVKAVRAYQKRLVSTAMTKPVRVVDE EVEKKTKVIVRSFTIARDMYYSAGDIQPSSRESELKPGAEFLESNRALSVQQEKRLKQMGATVRNAGCYIEKVKRNEEREKVARSVMEKMSVEQLSELLS FYRKMSHICSDVLETKLPHLGGVALEIGMATYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	1.0	0.9242
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	2.4	0.8804
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	3.0	0.8416
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	3.9	0.8603
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	4.9	0.8325
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10011041 [exp]	5.2	0.7928
AT3G26830		CYP71B15, PAD3	PHYTOALEXIN DEFICIENT 3, Cytoc...		Lus10011384 [exp]	6.5	0.8273
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	8.4	0.8347
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	8.9	0.9077
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	8.9	0.8094

Compare expression of checked genes

Lus10009152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.