Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03530 691 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03520 670 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03540 654 / 0 NPC5 non-specific phospholipase C5 (.1) AT1G07230 590 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 582 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G48610 554 / 0 NPC6 non-specific phospholipase C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028492 [exp] 1010 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10005860 [exp] 590 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10040678 [exp] 577 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10035935 [exp] 551 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 549 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10036038 [exp] 325 / 2e-108 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10036039 [exp] 169 / 2e-49 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1) Lus10001207 [exp] 137 / 1e-38 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1) Lus10009690 [exp] 143 / 4e-38 AT2G26870 258 / 9e-82 non-specific phospholipase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073600 [exp] 832 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1) Potri.001G275500 [exp] 589 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 582 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.009G069900 [exp] 581 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.015G097900 [exp] 571 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.001G250500 [exp] 570 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 566 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10009153 pacid=23150017 polypeptide=Lus10009153 locus=Lus10009153.g ID=Lus10009153.BGIv1.0 annot-version=v1.0 ATGGTGCCCGAAACACTAGAGAGCTCTTCTTCACCTTCTCAATCCCCAATCAAAACTGTCGTGGTTCTAGTCCAAGAGAACCGATCCTTCGACCACATGC TCGGCTGGCTCAAAACCATCAACCCGGAAATCAACGGAGTAACCGGTTCCGAATCCAACCCGATCTCCACCTCCGACTCCAACTCCAACCTCGTCTACTT CAAAGACCAGGCGGCCTACGTGGACCCTGACCCGGGCCACTCCATCCAGGCCATCTACGAGCAAGTCTTCGGGTTGACGTGGACTGCCGAGTCAGCAGCC GGCTCCTCCAACCTCACCCCGAAGATGAACGGGTTCGCACAAAACGCTGAGCGGACCCAGAAGGGGATGGCCGAGACTGTCATGAACGGGTTCAAGCCCG AGGCGGTCCCGGTCTACAAGGAGCTGGCGGAGAATTTCGCCGTTTGCGACCGGTGGTTCGCTTCTGTCCCCGCGTCCACCCAGCCGAACCGGCTGTACGT GCACTCGGCCACGTCACACGGGGCGACGAGTAACGACACGAAGCAGCTGGCTGAAGGGTTCCCTCAGAAGACGATTTTCGAGTCGATGGAAGAGTCTGGT TTTAGCTTCGGGATTTACTATCAGTACCCTCCCTCTACTCTCTTTTACAGGAATCTAAGAAAGCTGAAGTACATTGACAACTTTCACCAGTTCGACATAA GCTTCAAGAAGCACTGCGAGGAAGGTAACCTCCCGAACTACGTCGTAGTCGAACAGAGGTACTTCGACGTCCTCTCCATCCCTGGAAACGACGACCATCC TTCCCACGATGTCTCCGAAGGGCAGAAGTTCGTGAAGCAAGTTTACGAGTCCCTCAGGTCTAGCCCCCAGTGGAACGAGATACTGTTCGTCATCATCTAT GACGAACATGGCGGCTTCTACGACCACGTTCCGACTCCTAACGTCGGCGTTCCTAGCCCGGACGACCTTGTGGGCCCCGCTCCTTACAACTTCAAGTTTG ACCGTCTCGGCGTCAGGATCCCTGCCTTCCTGATCTCCCCCTGGATTCGCCCTGGAACAGTGGTCCATGGACCATCAGGACCTTACCCGAACTCAGAATT CGAGCACTCTTCCATCCCAGCAACTGTGAAAAAGATATTCAACCTCAAGGACTTCTTGACCAAGCGTGACGCTTGGGCCGGCACTTTCGACGGCGTACTA ACTCTCACCACTCCCAGAACCGATTGTCCACTGAAACTGGGAGAGCCCGTGAAGCTGAGAGACGGAGAAGCGAAAGGAGAGGCGAAGCTGAACGAATTCC AGGAGGTGATGGTTCAGATGACGGCGGCGCTGCTCGGGGAGCATAACAAGAAGAACTCTACGTATCCAGACAAGCTCGTCGAAGGGATGACGGTGGCCGA CGCTCTCAAGTTCAGCGACGAAGGGTACAAGAAGTTCATTGATGATTGTGGGAAAGCCAGGGCCAATGGAGCCGACGAGAACGACGTCGTTTGCTTGGCT GAGGAAGCAACAGCCAAGTCCAGATCTGCATTTCGTAAACTGGTTTCTTGCCTTGTGTGCAACCGTAGTTGA
AA sequence Show only first row Show all	>Lus10009153 pacid=23150017 polypeptide=Lus10009153 locus=Lus10009153.g ID=Lus10009153.BGIv1.0 annot-version=v1.0 MVPETLESSSSPSQSPIKTVVVLVQENRSFDHMLGWLKTINPEINGVTGSESNPISTSDSNSNLVYFKDQAAYVDPDPGHSIQAIYEQVFGLTWTAESAA GSSNLTPKMNGFAQNAERTQKGMAETVMNGFKPEAVPVYKELAENFAVCDRWFASVPASTQPNRLYVHSATSHGATSNDTKQLAEGFPQKTIFESMEESG FSFGIYYQYPPSTLFYRNLRKLKYIDNFHQFDISFKKHCEEGNLPNYVVVEQRYFDVLSIPGNDDHPSHDVSEGQKFVKQVYESLRSSPQWNEILFVIIY DEHGGFYDHVPTPNVGVPSPDDLVGPAPYNFKFDRLGVRIPAFLISPWIRPGTVVHGPSGPYPNSEFEHSSIPATVKKIFNLKDFLTKRDAWAGTFDGVL TLTTPRTDCPLKLGEPVKLRDGEAKGEAKLNEFQEVMVQMTAALLGEHNKKNSTYPDKLVEGMTVADALKFSDEGYKKFIDDCGKARANGADENDVVCLA EEATAKSRSAFRKLVSCLVCNRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	3.3	0.8601
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	5.7	0.8271
AT3G10120			unknown protein		Lus10021358 [exp]	5.9	0.8093
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	6.0	0.8188
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	9.9	0.7562
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	13.4	0.8198
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	20.4	0.8152
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	22.4	0.7708
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	25.5	0.7771
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	27.9	0.8150

Compare expression of checked genes

Lus10009153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.