Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16210 1473 / 0 HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028491 [exp] 2067 / 0 AT5G16210 1484 / 0.0 HEAT repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095900 [exp] 1641 / 0 AT5G16210 1578 / 0.0 HEAT repeat-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009154 pacid=23150058 polypeptide=Lus10009154 locus=Lus10009154.g ID=Lus10009154.BGIv1.0 annot-version=v1.0 ATGGATGTAGAGAGATCGTCGCTCTGCAATTGCGTAGTGAATTTCTTGCTGGAGGAGAATTACCTGCTGACGGCGTTCGAATTGCTCCACGAGCTGCTCG AAGATGGCAGGGATCACCATGCTATTCGCCTCAAGGAATTCTTCTCTGATCCTTCCAACTTCCCTCCCGACCAGATCTCCCGCTTGAACTCTCTTAGAGT TGCAGACCCTCAGAGTTTGCTAGAAGAAAATGAAGCTACTCGAGAAAAATTGGCACTTAGTGAGTATGAACTACGGTTGGCACACGAGGACATTTCAAAA TTGAAGTCCGATTTCCAGAAGAAAGTGGACTTAACGCCAGCCCAGTTTATTGAGTCAAAGCCAGATGCATCTGGGAGCCCAGTATCAGAGCTTCTAAGAC GAAAACAAGATGGTTTGTCCTATGACTTGGGTCCTTTGAAGGATAATGAGCGTAGGGATCTTAATTGTGCTGTGAAGGAATATCTACGATTGGCAGGATA CCGTCTTACTGCTATGACATTTTACGAAGAGGTTACAGATCAGAATTTAGATGTTTGGCAGGACACCCCTGCCAGTGTGCCGGATGCATTGCGCCATTAT TACTATCAATACCTTTCGTCCACATCACAGGCAGCAGAGGAAAAAGTGGCCATGATTCGAGAAAAAGAATCTCTGTTGAAAGTGAGAGAGACATTGAATG AGGAGAAGGAGAGGCTTCTAAAAGGCAAGGAGTTGGCTGAGAATCAGTTAAGTGGTTTAACTAAATTGTTTGAAGCTCTCCAGAAGGATTTCAAGGACAA GGAAAATCAGATAAAAATGCTGAAACAGTCACTGGAGCACCAAAGAAAGGACCTCAATGATTGCAGGTCAGAAATAACTTCATTAAAAATGCACATTGAG GGATATCGTTCTGGTAGGAACACAATGGCTACTGATGCTGACACTGTTGAAAGCCCGTCACTTGAGAAGTATAAGGAAGAGATAAAATTATTGCTTCTAG AAATAGAAAAGTTGAAAGCTAAACGTATGAATTTTTCTGAGTCTATGGATCGTGCAACCTCTGGAAAAGACTCAGCTCAACCTGAAGAAAGGGTGGTTGA GATTGATGAAGAGAAATCTATCATCTCTCGTCCAATTGATGCTGAAGCAGTTAACGAAGATGTTCAACCATCATCTGAAGATAGGAATAAGCCTGAGGGA ACTCTGCAGGATGTACCAGGAAGTTATGATGAGGCAGTTAATGCTGTGGATGGAAATCAAAGAATCGTGGAACAAAATGCTGAAGTGCCATCACCTACTC CTGGTGTTTCTGTAAAATCAGACAATCTAGGTTGTGACGGATGGTTAGAGAATACGGGTCCAGAGACAATCCAAATCCTTGCTGATGCTCTACCCAAAAT TGTACCTTATGTTCTAATAAACCATCGAGAGGAGCTTCTCCCTCTCATGATGTGTGCAATTGAGCGTCATCCAGATGGCAACACAAGGGATTCGTTAACA CATACATTATTCAATTTGATTAAACGCCCAGATGAGCAGCAGAGACAAATCATTATGGATGCATGCATTAGTCTGGCTAAGAATGTTGGACAGATGAGAA CAGAAACAGAATTGCTTCCTCAGTGCTGGGAACAAATAAATCATATGTATGAAGAACGCAGACTACTTGTTGCTCAATCTTGTGGACAGATTGCAGAATT TGTCAGGCCTGAGATCCGGGATTCTTTAATTCTTTCAATTGTACAGCAACTAATTGAGGATTCTGCAACTGTTGTTCGAGATGCTGCTGCTCATAATTTG GCTTTGCTGCTTCCACTATTTCCTAACGTGGACAAATACTTCAAGGTCGAAGAGTTGATGTTCCAACTGGTTTGTGATCCTTCTGGAATCGTGGTGGAAA CTACACTAAGGGAGCTGCTTCCTGCAGTAATAAAATGGGGAAACAATTTAGAACACATTTTGAAAGTTCTACTGTCCCATGCCTTAAGTAGTGCTCAGCG TTGCCCTCCACTTTCTGGTGTTGAAGGTTCACTCGAGTCTCATCTACGGGTCTTAGGGGAACGGGAACGCTGGAATCTTGACGTTTTGTTAAGGATGCTT GTGGAATTGTTTCCACTGATTGAAGAAAAGGCTTTTGAGACTTGTCCATTTTCTCCAGTTTTGAAGTCAAATAACACAATTTCTGATCCGTTGCTTGAAC TTTATGCAGGCCGCGGACATTTGGAATGGCCTGCATTTGAATGGATGCATGCGGACTGCTTTCCAGCCCTTATAAATCTGTCCTGTTTATTACATCAGAA GGAAGACAATCTGAGAAACAGAATTACAAAGTTCTTATTAGCTGTAGGAAAAAATTTCGGGGATTCATATCTGGCTCATATAATGCTGCCTGTATTCTTG GTAGCAGTTGGCGATGATGCTGATTTTACCTTTTTTCCTTCGGCGATACATTCAAGAATCAAAGGACTGAAACCAAAAACTTCCATTGCTACAAGATTGG CTACAACGTGTGTACTTCCCCTTCTTTTGGCTGGCGTTTTAGGTTCTCCCAGCAAACATGAAGAGCTAGCAGACTACTTGAGAAAGCTGTTAATCGATAA CTACCTGAAAGAGAGTCAGTCAGCTAGGCGCTATTCGGATGTTGTTGACGCTGTTCGGTTTCTCTGTACTTTCGAGCAGTATCACGGCATGATATTTAAC ATTTTGTGGGAAATGGTTGTTAGCTCCAGTGCAGATATGAAAATTCATGCTGCCAATCTGTTGAAAGTCATTGTCCCATATGTTGATACCAAAGTTGCTT CAGCGCACGTTGTACCTGCACTGGTAACTCTTGGTTCTGACCAGAACCTGAACGTGAAGCACGTCAGCATAGAATCGTTTGGAGCAGTGGCACAACATTT CAAAAATGACTTGATTGTTGATAAGATACGAGTTCAAATGGATGCATTCCTGGAAGATGGATCACATGAAGCTACAATCGCTGTTGTCCGAGCATTATCA GTAGCAGTGCCGCACACAACTGAGAGACTTAGAGATTATATCCTAAATTTAAGAAGCGTACCACCATCTCCAAGTGATGTTGTTCGTCGGCGCGAGAGGG CTAATGCATTTTGCGAAGCTATCCGTGCCCTCGACGCTACAGATCTCTCGGTAAACAGTGTGAAGGAGTACCTGCTGCCAGCAATATACAACATGCTAAA AGACCCAGATGCACTAGATCCAGCTCACAAGGAAGCTCTTGAGATAATTATGAAGGAAAGGTCTGGCGGAACTCTGGAAACCATAAGTAAGGTGATGGGA GCTCATCTAGGAATAGCATCATCGGTAAGCAGCTTCTTCGGGGAAAGCGGGATATTGGGTAAGAAAGAAACTGCGGACTTGTCTCCACAGCAGTCGCAGC CTCCATCACCCAAGGCCGTGCTGGTTCCGCCACCTCAACCAGCAGAAGATACGAGATTCTTGCGAATCATGAGAGGCAACTTCACTGACATGCTGAGGAC TAAAACGAAGAACCCTGTTACAGAGAATGATTGA
AA sequence Show only first row Show all	>Lus10009154 pacid=23150058 polypeptide=Lus10009154 locus=Lus10009154.g ID=Lus10009154.BGIv1.0 annot-version=v1.0 MDVERSSLCNCVVNFLLEENYLLTAFELLHELLEDGRDHHAIRLKEFFSDPSNFPPDQISRLNSLRVADPQSLLEENEATREKLALSEYELRLAHEDISK LKSDFQKKVDLTPAQFIESKPDASGSPVSELLRRKQDGLSYDLGPLKDNERRDLNCAVKEYLRLAGYRLTAMTFYEEVTDQNLDVWQDTPASVPDALRHY YYQYLSSTSQAAEEKVAMIREKESLLKVRETLNEEKERLLKGKELAENQLSGLTKLFEALQKDFKDKENQIKMLKQSLEHQRKDLNDCRSEITSLKMHIE GYRSGRNTMATDADTVESPSLEKYKEEIKLLLLEIEKLKAKRMNFSESMDRATSGKDSAQPEERVVEIDEEKSIISRPIDAEAVNEDVQPSSEDRNKPEG TLQDVPGSYDEAVNAVDGNQRIVEQNAEVPSPTPGVSVKSDNLGCDGWLENTGPETIQILADALPKIVPYVLINHREELLPLMMCAIERHPDGNTRDSLT HTLFNLIKRPDEQQRQIIMDACISLAKNVGQMRTETELLPQCWEQINHMYEERRLLVAQSCGQIAEFVRPEIRDSLILSIVQQLIEDSATVVRDAAAHNL ALLLPLFPNVDKYFKVEELMFQLVCDPSGIVVETTLRELLPAVIKWGNNLEHILKVLLSHALSSAQRCPPLSGVEGSLESHLRVLGERERWNLDVLLRML VELFPLIEEKAFETCPFSPVLKSNNTISDPLLELYAGRGHLEWPAFEWMHADCFPALINLSCLLHQKEDNLRNRITKFLLAVGKNFGDSYLAHIMLPVFL VAVGDDADFTFFPSAIHSRIKGLKPKTSIATRLATTCVLPLLLAGVLGSPSKHEELADYLRKLLIDNYLKESQSARRYSDVVDAVRFLCTFEQYHGMIFN ILWEMVVSSSADMKIHAANLLKVIVPYVDTKVASAHVVPALVTLGSDQNLNVKHVSIESFGAVAQHFKNDLIVDKIRVQMDAFLEDGSHEATIAVVRALS VAVPHTTERLRDYILNLRSVPPSPSDVVRRRERANAFCEAIRALDATDLSVNSVKEYLLPAIYNMLKDPDALDPAHKEALEIIMKERSGGTLETISKVMG AHLGIASSVSSFFGESGILGKKETADLSPQQSQPPSPKAVLVPPPQPAEDTRFLRIMRGNFTDMLRTKTKNPVTEND

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	0	1
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	1.0	0.9504
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	1.4	0.9422
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	3.5	0.9382
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	4.5	0.9363
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	4.9	0.9376
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	5.7	0.9275
AT4G20720			dentin sialophosphoprotein-rel...		Lus10015137 [exp]	6.4	0.9019
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	7.3	0.9272
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	7.4	0.8972
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	8.4	0.9271

Compare expression of checked genes

Lus10009154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.