Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02600 471 / 5e-166 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT2G01180 404 / 2e-140 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT1G15080 383 / 1e-132 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G18220 326 / 5e-110 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028489 [exp] 566 / 0 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10007933 [exp] 453 / 1e-152 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035262 [exp] 410 / 2e-142 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034630 [exp] 387 / 3e-133 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034629 [exp] 374 / 6e-129 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10035261 [exp] 372 / 6e-128 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10013470 [exp] 337 / 5e-115 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013469 [exp] 111 / 3e-26 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095400 [exp] 480 / 1e-169 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 464 / 8e-164 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.010G119400 [exp] 440 / 2e-154 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.008G124900 [exp] 421 / 4e-147 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.010G119300 [exp] 391 / 1e-135 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10009155 pacid=23150020 polypeptide=Lus10009155 locus=Lus10009155.g ID=Lus10009155.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCAAACTTTTTGAATTATTTTATGCTGGGATGGAGGGTAGTGAAGAATCAGGTCACCAAGCGCCATTTGAGCGAGCTGCTGCTTTCAACCA AACTGGAGGAGGGTCCATTCCCTGACCTGTTGACTGGAGTGTCTGCTTGCAGCTCAGCCACACGTATCCATTCCTCCATGATTGGATCTCGAACCCCGAT CTCGCTTTTGGCTGTTCAAGCGCTCAGGACATCCGCCAAGATGTCAGAGATTACTGCAAGCGATATTCAAACCCTTCCATCCATTCATCTTCCTCTAATA GATAGAACAAATGAAGAGGTAACGAAGCAGTACAAGATGAGTGATGTCCACCTTGGAGTTCATACTGCAACAAGTCATGGAGCTACTGTTGCCAGGAAAC ACATGTACGATTGGCTCATACTTGCTCTTCTTGTACTGATGGATGTTATCCTTTATATTATCCATCCTTTTTATCGCTTTGTTGGGAAGGATATGATGAC AGATCTCAAGTACCCTTTGAAAAGCCAAACAGTTCCTATTTGGATAGTCCCAATGTATGCTATCCTTATACCAATAGTGATTTTCATCTTGGTGTATTTT CGAAGAAGAGACATCTATGATCTCCACCATGCTATACTAGGTCTCTTGTTTTCCGTCCTAGTGACAGCTGTCATCACTGATTCAATAAAAAATGCTGTTG GTCGTCCTCGGCCTGATTTCTTCTGGCGTTGTTTTCCCGATGGAAATGATGCTTATGATCAGTTGGGAAACGTTATTTGCCATGGCGATAGAGGTGTCAT AAAGGAAGGGCATAAGAGTTTTCCAAGTGGGCACACTTCATGGTCCTTTGCGGGTCTAGGATTCCTGTCACTCTATTTATCAGGAAAGGTAAAAGCATTT GACTGTAGAGGCCACATTGCAAAGCTATGCGTCATCTTTCTCCCGCTACTTGTTGCATGTCTGGTTGCCATTTCTCGTGTGGATGACTATTGGCATCATT GGCAGGATGTTTTCGCTGGCGGTGTTCTCGGGCTTGTAGTGTCTACATTTTGCTATCTGCAGTTTTTCCCCCCACCATACCATCCTCAAGGTTGGGGCCC TTATGCTTATTTTCGGGTATTGGAGGAGGCACAAAAAACTACAGAGGCTGTGAATCTGTTTCATGCAGCAGCTAACAACAATGTAGTAGAAAATGAAGAA GAGGAAGAAAAAGGGTTTATGGGGCTCCAACTCGAAGGTGATGATCCTAGTTCGAGAACGATCGGGGACGAAGAATGTGGGAGGAATTAG
AA sequence Show only first row Show all	>Lus10009155 pacid=23150020 polypeptide=Lus10009155 locus=Lus10009155.g ID=Lus10009155.BGIv1.0 annot-version=v1.0 MAVSNFLNYFMLGWRVVKNQVTKRHLSELLLSTKLEEGPFPDLLTGVSACSSATRIHSSMIGSRTPISLLAVQALRTSAKMSEITASDIQTLPSIHLPLI DRTNEEVTKQYKMSDVHLGVHTATSHGATVARKHMYDWLILALLVLMDVILYIIHPFYRFVGKDMMTDLKYPLKSQTVPIWIVPMYAILIPIVIFILVYF RRRDIYDLHHAILGLLFSVLVTAVITDSIKNAVGRPRPDFFWRCFPDGNDAYDQLGNVICHGDRGVIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKVKAF DCRGHIAKLCVIFLPLLVACLVAISRVDDYWHHWQDVFAGGVLGLVVSTFCYLQFFPPPYHPQGWGPYAYFRVLEEAQKTTEAVNLFHAAANNNVVENEE EEEKGFMGLQLEGDDPSSRTIGDEECGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	0	1
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	1.0	0.9198
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	2.0	0.9193
AT5G19670			Exostosin family protein (.1)		Lus10043239 [exp]	3.0	0.9030
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018403 [exp]	3.5	0.9076
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	4.2	0.9155
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	5.7	0.9064
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	7.1	0.9093
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	7.2	0.9105
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	9.2	0.9067
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	9.7	0.8943

Compare expression of checked genes

Lus10009155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.