Plant FIBer expression Database

Lus10009156 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009157
[exp]
228 / 1e-78 AT2G47485 57 / 6e-11 unknown protein
Lus10028488
[exp]
216 / 9e-74 ND 48 / 1e-07
Lus10028487
[exp]
212 / 4e-72 AT2G47485 52 / 4e-09 unknown protein
Lus10017613
[exp]
144 / 5e-45 AT3G62650 47 / 2e-07 unknown protein
Lus10033571
[exp]
142 / 2e-44 AT2G47485 43 / 9e-06 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G095200
[exp]
100 / 5e-28 AT2G47485 58 / 2e-11 unknown protein
Potri.004G095150
[exp]
100 / 5e-28 AT2G47485 58 / 2e-11 unknown protein
Potri.017G119800
[exp]
98 / 5e-27 AT2G47485 66 / 2e-14 unknown protein
Potri.010G119200
[exp]
82 / 7e-21 AT2G47485 57 / 3e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10009156 pacid=23150068 polypeptide=Lus10009156 locus=Lus10009156.g ID=Lus10009156.BGIv1.0 annot-version=v1.0
ATGGAGCTGATTCCGACGTCGTGGAACAGATACTGGAGGAGGAACAGATACCTAAAGCTGAGGGAGGCCCCCCTGCGGAAGAGGAACATCCAGGTCGCTA
GGCTCGGGAACTCCTCCCCTGGAAGGTTGGGGTGGAGGATAAAGGTGGTGCCGAAGCTGAGGCTTAGAGTGGTGGTATCGGCGCCGTTAAAGCTGGTGGC
GAAGCTGAAGAACAGCTACGTAGACATGATGGTCAAACTGGCGGGGAGCGTTGGGTCGTTGAATACAAACAGGGTGTTCGGGAACAAGAGGGTTCCTAAA
GCGAGGCAGCTCCGGATGTCTTGCTCCGACCAAGAGTTCCAGAACCGGATTATTTACGAGATGTTTAAGAACATCTCGTCTGCTCATGAATTAACTCCTT
TGTAG
AA sequence
>Lus10009156 pacid=23150068 polypeptide=Lus10009156 locus=Lus10009156.g ID=Lus10009156.BGIv1.0 annot-version=v1.0
MELIPTSWNRYWRRNRYLKLREAPLRKRNIQVARLGNSSPGRLGWRIKVVPKLRLRVVVSAPLKLVAKLKNSYVDMMVKLAGSVGSLNTNRVFGNKRVPK
ARQLRMSCSDQEFQNRIIYEMFKNISSAHELTPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G47485 unknown protein Lus10009156
[exp]
0 1
AT2G14095 unknown protein Lus10001300
[exp]
1.0 0.9789
AT1G10370 GST30B, ATGSTU1... GLUTATHIONE S-TRANSFERASE U17,... Lus10030805
[exp]
3.5 0.9777
AT5G26340 ATSTP13, MSS1, ... SUGAR TRANSPORT PROTEIN 13, Ma... Lus10010534
[exp]
3.5 0.9788
AT5G36930 Disease resistance protein (TI... Lus10014671
[exp]
3.7 0.9731
AT4G36810 GGPS1 geranylgeranyl pyrophosphate s... Lus10009137
[exp]
4.5 0.9771
AT2G38740 Haloacid dehalogenase-like hyd... Lus10030929
[exp]
5.2 0.9720
AT5G57510 unknown protein Lus10028472
[exp]
8.9 0.9715
AT4G36990 HSF AT-HSFB1, ATHSF... ARABIDOPSIS THALIANA HEAT SHOC... Lus10009351
[exp]
9.7 0.9762
AT4G01575 serine protease inhibitor, Kaz... Lus10010286
[exp]
11.3 0.9618
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Lus10012582
[exp]
12.6 0.9497

Lus10009156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.