Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009156 [exp] 202 / 4e-68 AT2G47485 50 / 2e-08 unknown protein Lus10028487 [exp] 195 / 3e-65 AT2G47485 52 / 4e-09 unknown protein Lus10028488 [exp] 182 / 3e-60 ND 48 / 1e-07 Lus10017613 [exp] 129 / 5e-39 AT3G62650 47 / 2e-07 unknown protein Lus10033571 [exp] 128 / 1e-38 AT2G47485 43 / 9e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095200 [exp] 83 / 3e-21 AT2G47485 58 / 2e-11 unknown protein Potri.004G095150 [exp] 83 / 3e-21 AT2G47485 58 / 2e-11 unknown protein Potri.017G119800 [exp] 82 / 9e-21 AT2G47485 66 / 2e-14 unknown protein Potri.010G119200 [exp] 66 / 1e-14 AT2G47485 57 / 3e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009157 pacid=23150073 polypeptide=Lus10009157 locus=Lus10009157.g ID=Lus10009157.BGIv1.0 annot-version=v1.0 ATGGAGCTAATTCCGACGTCGTGGAACAGATACTGGAGGAGGAACAGATACCAAAGGCTGAACGAAGCCCCCATCCGCAAGAGGAACACCCGAGTCGCTA GGCTCGGGAACTCCTCCCCCGGGAGGTTCGGGTGGAGGATAAAGGTGGTGCCGAAGCTGAGGCTGAGAGTGGTGGTCACTGCGCCGTTAAAGCTGGTGGC GAAACTGAAGAATAGCTACGTGGACATGATGGTCAAACTGGCGGGAAGCGTGGGGTCGTTGAATACCAACAGGGTGTTTGGTAACAGGAGGGTTCCTAAA GCGAGACAGCTACGGATGTCTTGCTCCGACCAAGAGTTCCAGAACCGGATTATTTACGAGATGTTTAAGAACATTTCTTCTGCTCATGAATTGAATCCCA TGTAG
AA sequence Show only first row Show all	>Lus10009157 pacid=23150073 polypeptide=Lus10009157 locus=Lus10009157.g ID=Lus10009157.BGIv1.0 annot-version=v1.0 MELIPTSWNRYWRRNRYQRLNEAPIRKRNTRVARLGNSSPGRFGWRIKVVPKLRLRVVVTAPLKLVAKLKNSYVDMMVKLAGSVGSLNTNRVFGNRRVPK ARQLRMSCSDQEFQNRIIYEMFKNISSAHELNPM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47485			unknown protein		Lus10009157 [exp]	0	1
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10036077 [exp]	1.4	0.8280
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	2.4	0.8390
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	19.0	0.7624
AT1G10810			NAD(P)-linked oxidoreductase s...		Lus10010566 [exp]	20.4	0.7909
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	24.2	0.8168
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	24.5	0.7682
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	25.8	0.7627
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	28.4	0.8163
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	33.0	0.7668
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	36.0	0.8126

Compare expression of checked genes

Lus10009157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.