Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16150 618 / 0 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 296 / 7e-94 Major facilitator superfamily protein (.1) AT1G67300 259 / 5e-80 Major facilitator superfamily protein (.1.2) AT1G79820 247 / 3e-75 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G43330 150 / 2e-39 ATINT1 inositol transporter 1 (.1) AT2G20780 147 / 6e-38 AtPLT4 Major facilitator superfamily protein (.1) AT2G16130 137 / 7e-35 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT1G75220 136 / 2e-34 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT3G18830 136 / 3e-34 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G19450 134 / 9e-34 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028486 [exp] 885 / 0 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 724 / 0 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 723 / 0 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 265 / 1e-81 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 252 / 7e-77 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10034930 [exp] 227 / 2e-67 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025565 [exp] 159 / 3e-42 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10018581 [exp] 156 / 3e-41 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10027026 [exp] 154 / 2e-40 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097800 [exp] 653 / 0 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 471 / 2e-164 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 288 / 1e-90 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 267 / 7e-83 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 253 / 1e-77 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G039100 [exp] 154 / 1e-40 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 151 / 1e-39 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 151 / 2e-39 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 149 / 8e-39 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 147 / 4e-38 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10009158 pacid=23150052 polypeptide=Lus10009158 locus=Lus10009158.g ID=Lus10009158.BGIv1.0 annot-version=v1.0 ATGCCAGTATCATCCACCCTTGTCGTGAAAGCCAGCGTCTTTGGTTTCGACGCCGGGTTACACACGCAAAAACACCGGACCCTCGGATTGGCCGGTGCTT CTTCTGCCGATCGCCGTCGCGTGAGGTTGACGAACTCGTTGGCGTTGAAAAGAGATCGCTGCATGATTAATTCTTGCTTCGGACTGCGTAACGATTCGGC TCCGATGGGGACCGAGCTGGTTCAACCTAGCCTCTTCAGGAACCGGCCAGTCAGAGCTCTATCTTCTGATGGTGACATTGAAGATGCGGCTCCATTAAAC CCCCGGGATTTTACGGTCCAGAAAAGACCGTCTACTGGAACAGTCTTGCCATTTGTTGGTGTTGCATGTCTTGGAGCTACTCTGTTCGGTTATCATCTCG GAGTGGTGAATGGTGCTCTCGAGTACCTAGCTAAAGATCTTGGGATTGCTGAAAACGCTGTCATTCAAGGATGGATTGTCAGCACACTGCTTGCTGGTGC AACTGTTGGTACATTTACTGGTGGTGCATTGGCTGACAAATTCGGCAGAACAAGGACGTTTCAGTTAGATGCTATCCCACTCACCATCGGGGCTATTCTT TGTGCCACAGCCCAAAGTGTACAAACCATGTTAATCGGTCGTCTACTTGCTGGTATTGGAATTGGCATCTCTTCTGCAATTGTGCCACTTTACATATCTG AGATCTCGCCAACTGAAATCCGGGGTGCTCTAGGTTCTGTAAACCAGCTTTTTATATGCATTGGGATTCTTTTGGCATTGGTAGCTGGGTTACCTTTAGC TGGAAATCCCATATGGTGGCGAACAATGTTTGGCATTTCTGCTGTGCCTTCCATCCTGTTGGCACTAGGAATGGCATTCTCTCCGGAAAGCCCGCGGTGG CTGGTCCAGCAAGGAAAGATTCCCGAAGCGGAAAAGGCCATACAGACACTTTACGGGAAAGAAAGAGTGTCGGAAGTCATGCAAGACTTGAGCTCATCTG GTCAAGGTTCCTCGGAGCCAGAGGCAGGGTGGTTTGATCTGTTTAGTACTCGTTACTGGAAAGTTGTAAGTGTGGGAGTAGCGCTGTTCTTTTTCCAGCA GATGGCTGGTATAAATGCTGTGGTCTATTACTCAACTGCTGTGTTCCGAAGCGTTGGAATCGGATCTGATGTTGCAGCAAGCGCCCTCGTTGGAGCATCA AATGTTATTGGCACAACGATTGCGTCTTCGTTGATGGACAAACAAGGAAGGAAAAGTCTCTTGGTCACAAGCTTTTTGGGAATGGCCGCTTCGATGTTGC TGCTTTCCTTGTCCCTAACTTGGAAGGTCCTGGCACCGTATTCCGGCACGCTTGCAGTTCTTGGTACAGTTTGCTATGTCCTATCATTTTCACTCGGGGC CGGTCCAGTACCTGCACTTTTACTGCCAGAGATATTTGCCTCCAGAATTAGAGCCAAAGCAGTTTCACTATCATTGGGCATGCACTGGATTGCAAACTTC GTCATCGGCCTTTATTTCTTGAGCGTGGTGAATAAGTACGGGATAAGCATGGTCTATTTAGGATTCTCAGGGGTCTGTCTCCTTGCAGTCGTGTACGTAC TTAACAATGTCGTTGAGACGAAAGGAAGATCATTGGAGGAGATCGAACGTGCTTTGACTACACCAGCATGA
AA sequence Show only first row Show all	>Lus10009158 pacid=23150052 polypeptide=Lus10009158 locus=Lus10009158.g ID=Lus10009158.BGIv1.0 annot-version=v1.0 MPVSSTLVVKASVFGFDAGLHTQKHRTLGLAGASSADRRRVRLTNSLALKRDRCMINSCFGLRNDSAPMGTELVQPSLFRNRPVRALSSDGDIEDAAPLN PRDFTVQKRPSTGTVLPFVGVACLGATLFGYHLGVVNGALEYLAKDLGIAENAVIQGWIVSTLLAGATVGTFTGGALADKFGRTRTFQLDAIPLTIGAIL CATAQSVQTMLIGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILLALVAGLPLAGNPIWWRTMFGISAVPSILLALGMAFSPESPRW LVQQGKIPEAEKAIQTLYGKERVSEVMQDLSSSGQGSSEPEAGWFDLFSTRYWKVVSVGVALFFFQQMAGINAVVYYSTAVFRSVGIGSDVAASALVGAS NVIGTTIASSLMDKQGRKSLLVTSFLGMAASMLLLSLSLTWKVLAPYSGTLAVLGTVCYVLSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWIANF VIGLYFLSVVNKYGISMVYLGFSGVCLLAVVYVLNNVVETKGRSLEEIERALTTPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	0	1
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	1.0	0.8637
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	6.5	0.8211
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	6.8	0.8351
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027914 [exp]	7.3	0.7799
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	9.8	0.8174
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	13.0	0.7975
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	13.0	0.8244
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	13.5	0.8314
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10039828 [exp]	22.0	0.7959
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10000266 [exp]	22.2	0.7955

Compare expression of checked genes

Lus10009158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.