Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67050 107 / 2e-27 unknown protein AT1G68330 59 / 6e-10 unknown protein AT5G38320 41 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028485 [exp] 300 / 3e-102 AT1G67050 160 / 8e-48 unknown protein Lus10034341 [exp] 58 / 2e-09 AT1G68330 117 / 4e-31 unknown protein Lus10041430 [exp] 53 / 6e-08 AT1G68330 111 / 4e-29 unknown protein Lus10019352 [exp] 41 / 0.0003 AT5G66800 85 / 3e-21 unknown protein Lus10009349 [exp] 41 / 0.0003 AT5G66800 113 / 5e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098700 [exp] 159 / 8e-48 AT1G67050 117 / 6e-32 unknown protein Potri.017G115700 [exp] 149 / 1e-43 AT1G67050 112 / 6e-30 unknown protein Potri.010G122800 [exp] 66 / 3e-12 AT1G68330 136 / 7e-39 unknown protein Potri.008G122300 [exp] 63 / 2e-11 AT1G68330 134 / 6e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009160 pacid=23150050 polypeptide=Lus10009160 locus=Lus10009160.g ID=Lus10009160.BGIv1.0 annot-version=v1.0 ATGGCGGTTGATCTCTGTACAATTGCGGTTGATCTCTGTTCAGAACCTAGCTCCGGAATCAGCCCTAGAATTTCCTTCTCCCACGATTTCTGCCTCTCCG AATTCGCCTCCCTTGATCAACAGCAGCAGCAGCACCACCCCCCCCCCCCCCCGCCACTGTTCCGATCCGCCTCTCCAGGCAGCAGCATTGATTTCGATTT CTGCGTTCGAAAGACCAGCTTCGATCAGGACTCCTCCTCCGCCGATGAGCTCTTCTCCGACGGCAAAATCCTCCCAACTCAAATCAAGACCAAGTCCTCC AACGCCACGAAACCTCCGCCGTCCCTTCCGTCGCCAATCGACGGCGACGTCTCGAGTACTAACAAGCGAGAAGAGGAAGAAGTAGAAGATCGTCATCGAA ACTGCAAGGAGAGTAGTAATTGCAATCATAGCCATAACAATCTCGGGAGCGACGAGGAGGCGAAGCAGCAGCAGAGCACGTCCAAATCGTTTTGGCGGTT TAAGCGGAGCAGCAGCGTGAATTGCGGCACGGGTTACGGCAGGACGTTATGCCCCTTGCCGCTTCTTTCACGGAGCAATTCCACCGGCTCCTCGTCAACC GCTAGCGTCAAACGGGGTGCGGACACCGGTAAGCACCAAAAACAACAGCCGGCGGGGACGACGAGACTGTCGTCGGACCACCACAAGAAGCCTCCGTTGA GGAAGAGTAGTAATAATAACGGAGGTTACGGGAACGGCGGGGCAGGGGTGCGAGTGAGTCCGGTGATAAATGTGGCGTCGGGGAATATGTTTGGTTTAGG TTCCATCTTCTTCAGTAGTAATAATAATAAGGACAAGAGCAAGAGCAGGAAGTGA
AA sequence Show only first row Show all	>Lus10009160 pacid=23150050 polypeptide=Lus10009160 locus=Lus10009160.g ID=Lus10009160.BGIv1.0 annot-version=v1.0 MAVDLCTIAVDLCSEPSSGISPRISFSHDFCLSEFASLDQQQQQHHPPPPPPLFRSASPGSSIDFDFCVRKTSFDQDSSSADELFSDGKILPTQIKTKSS NATKPPPSLPSPIDGDVSSTNKREEEEVEDRHRNCKESSNCNHSHNNLGSDEEAKQQQSTSKSFWRFKRSSSVNCGTGYGRTLCPLPLLSRSNSTGSSST ASVKRGADTGKHQKQQPAGTTRLSSDHHKKPPLRKSSNNNGGYGNGGAGVRVSPVINVASGNMFGLGSIFFSSNNNKDKSKSRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67050			unknown protein		Lus10009160 [exp]	0	1
AT1G67050			unknown protein		Lus10028485 [exp]	1.0	0.9154
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	1.4	0.9092
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	5.2	0.8393
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	5.5	0.8214
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	7.1	0.8348
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	9.3	0.8032
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	11.0	0.8670
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	11.2	0.8205
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10002723 [exp]	12.5	0.8327
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	12.5	0.8713

Compare expression of checked genes

Lus10009160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.