Plant FIBer expression Database

Lus10009161 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67060 354 / 4e-125 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028484
[exp]
241 / 1e-81 AT1G67060 219 / 3e-73 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G098800
[exp]
368 / 1e-130 AT1G67060 353 / 9e-125 unknown protein
Potri.015G045900
[exp]
184 / 2e-59 AT1G67060 187 / 4e-61 unknown protein
PFAM info
Representative CDS sequence
>Lus10009161 pacid=23150075 polypeptide=Lus10009161 locus=Lus10009161.g ID=Lus10009161.BGIv1.0 annot-version=v1.0
ATGTCGACACCCAACTGGGAACTGCAGAACTGCTGTCAGAAAGACCAGGTCACCTTCTTGGTTACCATCGGCGTGTTCTCCCTTGTCATCCTTGCGCTGT
GGAGGACAGTGCTACTAACGCCGTTTAAGCTCATCACAGTGTTTATGCACGAAGCTAGTCATGCAATTGCTTGCATACTCACATGTGGAAAGGTTGAAGG
GATTCAGGTTCATGCCAATGAAGGAGGTGTGACACAAACACGTGGTGGCATATACTGGTTGATCTTGCCTGCAGGATATCTTGGTTCTTCATTTTGGGGA
ATGCTTTTGATACTTGCATCCACCAATCTTCTTACCGCAAGAATTGCTGCTGGTTGTTTGGGTGTTGCTCTCCTCGTTGTGCTTTTCATTGCTAAGAATT
GGACGCTTCGAGGACTGTGTATTGGATTCATTGTGTTCCTTGCTGTCATTTGGGTACTACAAGAATACACTAAAGTAAAGATCCTCCGATATGTTATTCT
CTTCATTGGTGTCATGAACAGTTTGTTTTCGGTTTATGATATTTATGATGACCTAATATCTCGAAGAGTTCACTCCAGTGATGCTGAGAAGTTTGCAGAA
CTCTGTCCTTGCCCCTGCACTGGCGTTGGCTGGGGGATCATCTGGAGGTTCATATTGAGGAAACACCAGCTGACTATGAGCATTTGCGTTCAACATTCGG
AGAAATCTGATTGA
AA sequence
>Lus10009161 pacid=23150075 polypeptide=Lus10009161 locus=Lus10009161.g ID=Lus10009161.BGIv1.0 annot-version=v1.0
MSTPNWELQNCCQKDQVTFLVTIGVFSLVILALWRTVLLTPFKLITVFMHEASHAIACILTCGKVEGIQVHANEGGVTQTRGGIYWLILPAGYLGSSFWG
MLLILASTNLLTARIAAGCLGVALLVVLFIAKNWTLRGLCIGFIVFLAVIWVLQEYTKVKILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAE
LCPCPCTGVGWGIIWRFILRKHQLTMSICVQHSEKSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67060 unknown protein Lus10009161
[exp]
0 1
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10019992
[exp]
17.1 0.8433
AT5G24430 Calcium-dependent protein kina... Lus10008875
[exp]
23.2 0.8367
AT1G61240 Protein of unknown function (D... Lus10006728
[exp]
31.4 0.8248
AT2G05755 Nodulin MtN21 /EamA-like trans... Lus10030012
[exp]
37.8 0.7799
AT5G57330 Galactose mutarotase-like supe... Lus10015540
[exp]
42.2 0.8219
AT4G09510 A/N-InvI, CINV2 alkaline/neutral invertase I, ... Lus10016938
[exp]
52.8 0.8064
AT5G28050 Cytidine/deoxycytidylate deami... Lus10001791
[exp]
100.4 0.7760
AT3G05940 Protein of unknown function (D... Lus10001058
[exp]
103.1 0.7926
AT4G32760 ENTH/VHS/GAT family protein (.... Lus10022140
[exp]
111.5 0.7909
AT3G14410 Nucleotide/sugar transporter f... Lus10016923
[exp]
115.7 0.7821

Lus10009161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.