Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60335 191 / 7e-63 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028483 [exp] 309 / 9e-110 AT5G60335 188 / 6e-62 Thioesterase superfamily protein (.1) Lus10031971 [exp] 217 / 7e-73 AT5G60335 152 / 5e-47 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133800 [exp] 194 / 4e-64 AT5G60335 208 / 2e-69 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01575 [flax] [poplar] MaoC_dehydratas MaoC like domain
Representative CDS sequence Show only first row Show all	>Lus10009162 pacid=23150046 polypeptide=Lus10009162 locus=Lus10009162.g ID=Lus10009162.BGIv1.0 annot-version=v1.0 ATGGTGGCCATCAAGAGTCTCATATCTAGATACTTGTCAACTGGAGCTACTATCCCACCACTTAGAACTGGAGAAATTCTACGACGAACCAGAGTTTTCT CGTGCGAAGACGTTCTTCGGTATTCAGAGGCCAGTCTAGATTGCAACCCTCTGCATTTTGATGCTGAAACGGCTCGGAATTCAGGATTCGAGGATCAATT AGTCCACGGAATGCTCGTTGCTGCACTCTTCCCCTGCATTATCTCGTCTCACTTCCCTGGTGCTGTTTATGCGTCACAAAGCTTGCATTTCAAGATACCG GTGTATATTGGAGAAGAGATCACTGGGGAGGTACAAGCTACTCATGTTAGAGAATACAAGAATAACAAGTACATCGCCAAATTTGCAACGAAATGCTTCA AGAGGAAGGGTGACAAGGATATGCTAATCATCGATGGCGAGGCTACTGCAATTCTGCCCACTCTAAAGATAGTAAGAGATTGA
AA sequence Show only first row Show all	>Lus10009162 pacid=23150046 polypeptide=Lus10009162 locus=Lus10009162.g ID=Lus10009162.BGIv1.0 annot-version=v1.0 MVAIKSLISRYLSTGATIPPLRTGEILRRTRVFSCEDVLRYSEASLDCNPLHFDAETARNSGFEDQLVHGMLVAALFPCIISSHFPGAVYASQSLHFKIP VYIGEEITGEVQATHVREYKNNKYIAKFATKCFKRKGDKDMLIIDGEATAILPTLKIVRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	0	1
AT3G27050			unknown protein		Lus10035208 [exp]	2.4	0.8376
AT3G52280		GTE6	general transcription factor g...		Lus10008393 [exp]	3.3	0.8069
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	6.0	0.8358
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	6.3	0.8412
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	6.7	0.8371
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	7.6	0.7862
AT2G39170			unknown protein		Lus10040608 [exp]	9.0	0.8132
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	9.8	0.8175
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	9.9	0.8214
AT3G27100			unknown protein		Lus10012534 [exp]	10.5	0.8107

Compare expression of checked genes

Lus10009162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.