Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48175 231 / 7e-78 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) AT1G68720 60 / 1e-10 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT5G24670 40 / 0.0004 TAD3, EMB2820 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2) AT5G28050 39 / 0.0008 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028482 [exp] 346 / 2e-123 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10034402 [exp] 61 / 6e-11 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10019153 [exp] 59 / 3e-10 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075300 [exp] 257 / 4e-88 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Potri.008G111100 [exp] 63 / 2e-11 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.010G132600 [exp] 57 / 9e-10 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10009163 pacid=23150049 polypeptide=Lus10009163 locus=Lus10009163.g ID=Lus10009163.BGIv1.0 annot-version=v1.0 ATGGATTACTCTGCTTCTGTTCAAGAGTCTTCACCTGAGACTCTTGCCTGGATGGAGCTTGCACTGAATCAGGCAAAAGAAGCCTTGAACGCTCTAGAAG TGCCAATTGGTTGCGTGATAGTTGCAGATGGGAGAGTTATTGCATCTGGAAGAAATCGAACGACAGAGACTAGAAATGCTACAAGACATGCAGAGATGGA AGCAATTGACCCTCTTCTTGAAGAGTGGAAAAAGGCTGGACTATCGGCATCACAAGTTGCCGAAAAATTCTCGAAATGCATTCTGTACGTGACATGCGAG CCGTGTATTATGTGTGCTGCTGCTTTGTCTATCCTTGGTATAAAGGAAGTATACTATGGATGTGCGAACGATAAATTTGGAGGGTGCGGCTCAATATTAT CACTGCATTCAAGCAACCCGCAACCACAATCTAGCGGGGAAGTTAAGCAAGGTTTCAAATGCAGTGGTGGAGTAATGGCAGCAGAAGCAGTCTCACTTCT GCGAAATTTCTATGAGCAAGGGAACCCTAATGCTCCAAAGCCTCACAGGGCAGTTGTTATTCAGCATGCAACTGCATAG
AA sequence Show only first row Show all	>Lus10009163 pacid=23150049 polypeptide=Lus10009163 locus=Lus10009163.g ID=Lus10009163.BGIv1.0 annot-version=v1.0 MDYSASVQESSPETLAWMELALNQAKEALNALEVPIGCVIVADGRVIASGRNRTTETRNATRHAEMEAIDPLLEEWKKAGLSASQVAEKFSKCILYVTCE PCIMCAAALSILGIKEVYYGCANDKFGGCGSILSLHSSNPQPQSSGEVKQGFKCSGGVMAAEAVSLLRNFYEQGNPNAPKPHRAVVIQHATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	1.0	0.9101
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	2.0	0.8986
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	2.4	0.8971
					Lus10006003 [exp]	3.2	0.8870
AT1G27461			unknown protein		Lus10018671 [exp]	4.5	0.8599
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	7.1	0.8762
AT5G17620			unknown protein		Lus10001340 [exp]	7.3	0.8567
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	7.5	0.8805
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	7.7	0.8961
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	8.8	0.8758

Compare expression of checked genes

Lus10009163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.