Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18410 337 / 2e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028481 [exp] 626 / 0 AT2G18410 348 / 1e-118 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099000 [exp] 457 / 5e-160 AT2G18410 369 / 1e-126 unknown protein Potri.017G115566 [exp] 223 / 8e-71 AT2G18410 156 / 8e-47 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10483 [flax] [poplar] Elong_Iki1 Elongator subunit Iki1
Representative CDS sequence Show only first row Show all	>Lus10009164 pacid=23150070 polypeptide=Lus10009164 locus=Lus10009164.g ID=Lus10009164.BGIv1.0 annot-version=v1.0 ATGATACATGGATGCAATGCTTGCAATGGCTGCTGCTTAAATGACAGTCTATTGCTCCCAGCTTCACAGTTGACCCGCCACATTATACTCAACTACGACA CATCATCAGCAAGTAGACGAGGTCTATTTGCTGCGGGCCCGGACTCCTTCCAAACAGCCCTCCTCTTCCCCGCCGTCATTCTCGCCAAACCACCGTGCCG CCACCGCGCTGTCACCAAGCCATCGATTGGGAACTATCAAGCGCCATTCCGACAAAACGTATTCCCGTACCCAATGGCGGATTCGATTTGCAGGACGCTA CGAGACGGAGCTTTGGAAGGAGAGCACGCTCCGTCTCTTACCATCAAAGACACAACATCTTCACCCTACGGATTCGACGTTTTCACTCACGTCCTCTCCC AGCTCTCCTCTCTCATTTTAGCTGGAAAATCACAGTCACGAGGCTTAGTGTTGGTTTCCTATTCGCGCTCTCCATCTTTCTACCTTGATTTGTTGAATAG AAGAGGAGTTGATGTTGCCTCTTCTCAGAATTGGATATATATTTTGGACTGTTATACGGATCCTCTTGGTTGGAAACATCAGCTTGTAAAGTCTGGAATT GTTGAGGATATTTCGTCTGCCAATTCATCAGCTGGCACTTGCATTCTACAGGATGTGAAGGATGTTGAGAAGTTGTATTCTTTGATTCTTGACTCCGGTG CAGGATTGGTTGGGCAAGGCAAAGTTCGTTTTTCTGTTGCAATTGATTCGGTAGCCGAAATGCATAGGCATGTACCTGTTTCCAAAATAGCAGGGCTTAT AAGCGACCTTCGTAGTCATGATCACATATCTAGCACATTTTGGCTGCTACATTCAGATATCCATGAAGTTAAGCTTACCACTTCCCTTGAATATCTGTCC TCTATGGTGGCTAGTGTTGAATCACATAACCAGTCTAGTGATAGCCATGTAAGAGACTTGGGAAGTCTATCTCTAGTGGATAATTCTTCTGGGAAAGGAA AGCTTCATACACGGTTCAAGCGCCGAAATGGCCGCGTACGCATAATGAACGAAGAATTCCATATAGAGGAGTTGGGGATGAAATTTACTTCTGTTTCGGG GGAAGATGGATTAGTCAGTCAAGGGCTGGTGCCGAAGGTACAATTCAATCTGGAGTTGTCAGAGAAGGAAAAAATGGAGAGAGCCAAAGTTGTCCTTCCT TTTGAGCACCAAGGAACCGGGAAACCGATCCAAATATACGATGGTCGGAAATCTCTTGCACCGGAGAGCATAACTGAAGCAGTAGCTGGAGGGAATTCAC AAAACAAGCCAGAAGAAAGCAGTGGTGGAGGTGGCGAGATAATATACTTTCGGGATTCTGACGATGAGAGGCCGGATTCTGATGAGGACCCAGATGATGA TCTTGATATCTAA
AA sequence Show only first row Show all	>Lus10009164 pacid=23150070 polypeptide=Lus10009164 locus=Lus10009164.g ID=Lus10009164.BGIv1.0 annot-version=v1.0 MIHGCNACNGCCLNDSLLLPASQLTRHIILNYDTSSASRRGLFAAGPDSFQTALLFPAVILAKPPCRHRAVTKPSIGNYQAPFRQNVFPYPMADSICRTL RDGALEGEHAPSLTIKDTTSSPYGFDVFTHVLSQLSSLILAGKSQSRGLVLVSYSRSPSFYLDLLNRRGVDVASSQNWIYILDCYTDPLGWKHQLVKSGI VEDISSANSSAGTCILQDVKDVEKLYSLILDSGAGLVGQGKVRFSVAIDSVAEMHRHVPVSKIAGLISDLRSHDHISSTFWLLHSDIHEVKLTTSLEYLS SMVASVESHNQSSDSHVRDLGSLSLVDNSSGKGKLHTRFKRRNGRVRIMNEEFHIEELGMKFTSVSGEDGLVSQGLVPKVQFNLELSEKEKMERAKVVLP FEHQGTGKPIQIYDGRKSLAPESITEAVAGGNSQNKPEESSGGGGEIIYFRDSDDERPDSDEDPDDDLDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18410			unknown protein		Lus10009164 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	2.0	0.8579
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	2.6	0.8844
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	6.5	0.8541
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	13.5	0.8188
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	15.3	0.8348
AT2G34060			Peroxidase superfamily protein...		Lus10013955 [exp]	15.6	0.8286
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	16.2	0.8292
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	18.2	0.7932
AT5G07900			Mitochondrial transcription te...		Lus10016550 [exp]	23.5	0.8072
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	24.0	0.8318

Compare expression of checked genes

Lus10009164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.