Plant FIBer expression Database

Lus10009165 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67070 541 / 0 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
AT3G02570 533 / 0 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028480
[exp]
887 / 0 AT1G67070 539 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10033563
[exp]
725 / 0 AT1G67070 534 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10017603
[exp]
634 / 0 AT3G02570 462 / 7e-162 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Lus10015062
[exp]
565 / 0 AT1G67070 505 / 1e-178 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G115500
[exp]
629 / 0 AT3G02570 560 / 0.0 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Potri.004G099100
[exp]
626 / 0 AT1G67070 573 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF01238 PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence
>Lus10009165 pacid=23150019 polypeptide=Lus10009165 locus=Lus10009165.g ID=Lus10009165.BGIv1.0 annot-version=v1.0
ATGGACTCTTCCAAGAACCGCCGCCTCCGCCGACTCAGATGCTCCGTCCAGCACTACGATTGGGGTAAAATGGGGAAGGATTCCCTTGTCGGAAGGGTCT
GCGCTTTCAATTCTGGCTCCCAGATCCAAATCAATAGGCCGTACGCCGAGTTCTGGATGGGGATCCATGACTCCGGCCCGTCTTTCGTCCTCGACACTGG
GGTAATTGGGAATAATGGCAACGCAATTGACTCCCACTCGCTCAGTTTGAAGGACTGGATTGCTCAGAACCCTTCCGTTCTCGGTGATAAGGTTTTCGAT
AAGTGGGGTTCTGATCTCCCCTTCTTGTTTAAGATACTTTCTGTAGGCAAAGCACTGTCAATTCAGGCGCACCCGGATAAAGAATTGGCAAAGAAGCTCC
ATAAGCTGCACCCAAGCATTTACAAGGATGGCAGTGACAAGCCTGAGATGGCTTTGGCCATTACAGAGTTTGAGGCCCTTTGCAGTTTCGTCTCTTTTGA
GGAGCTTAAAGATATTCTTCGTAATATTCCAGAGGTTGTAGAACTGATTGATAGTAAAGATGCTAGCCAACTGTTGCAAATCAATGACCAAGTGGAGAGC
GAAAAACTGAAATCATTATTGAGATGTATTTTCACCCAGTTGATGTCAGCCAGCAAAGAGATGACAACTAGAGCAGTGTCCAAGTTGAAAACCAGACTGC
AGAGGCAGAGCCAGGTGAGGAAGTTGACTGATAAAGAAAACCTCGTCTTGAAATTGGAGAAGGAATATCCAGATGATATTGGTGTTATATCTGCCTTTTT
CCTAAACCATGTTAAGCTTAATCCTGGTGAAGCTTTGTATCTTGGTGCAAATGAACCACACGCCTATATCTCTGGTGAGTGCGTTGAAGTCATGGTAACA
TCAGACAATGTCATTCGGGCCGGCCTTACTCCCAAGCATCGGGATGTCCAAACACTTTGCTCTATGCTCACCTACAAACAGGGATTTCCAAAAATCCTGA
AAGGATTTCCCCTCACTCCATACATAACAAGGTACCTCCCGCCATTTGACGAATTTGAGATGGACCGATGTTTCCTTCCAAAAGGTGCATCCACAGTGTT
TCCAGCAGTTCAGGGGCCGTCCATTTTCGTGATCACGGCTGGGGAGGGAGTAATGCAGGCAGGATCATCGTCTTTCATAGATGTAGTGGTTGAAGGGGAT
GTGTTATTTGCTCCTGCAGGTATCCAGATCATCGTGAAGACTGTATCCGAGTTGCATATGTATAGAGCTGGAGTAAATAGCAGATTCCTCCAAACCCTGT
GA
AA sequence
>Lus10009165 pacid=23150019 polypeptide=Lus10009165 locus=Lus10009165.g ID=Lus10009165.BGIv1.0 annot-version=v1.0
MDSSKNRRLRRLRCSVQHYDWGKMGKDSLVGRVCAFNSGSQIQINRPYAEFWMGIHDSGPSFVLDTGVIGNNGNAIDSHSLSLKDWIAQNPSVLGDKVFD
KWGSDLPFLFKILSVGKALSIQAHPDKELAKKLHKLHPSIYKDGSDKPEMALAITEFEALCSFVSFEELKDILRNIPEVVELIDSKDASQLLQINDQVES
EKLKSLLRCIFTQLMSASKEMTTRAVSKLKTRLQRQSQVRKLTDKENLVLKLEKEYPDDIGVISAFFLNHVKLNPGEALYLGANEPHAYISGECVEVMVT
SDNVIRAGLTPKHRDVQTLCSMLTYKQGFPKILKGFPLTPYITRYLPPFDEFEMDRCFLPKGASTVFPAVQGPSIFVITAGEGVMQAGSSSFIDVVVEGD
VLFAPAGIQIIVKTVSELHMYRAGVNSRFLQTL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10009165
[exp]
0 1
AT3G09740 ATSYP71, SYP71 syntaxin of plants 71 (.1) Lus10014759
[exp]
2.6 0.7507
AT3G56140 Protein of unknown function (D... Lus10040960
[exp]
9.4 0.7491
AT3G01040 GAUT13 galacturonosyltransferase 13 (... Lus10030703
[exp]
9.6 0.7769
AT5G08160 ATPK3 serine/threonine protein kinas... Lus10035273
[exp]
11.3 0.8049
AT4G10120 ATSPS4F Sucrose-phosphate synthase fam... Lus10041041
[exp]
11.4 0.7360
AT3G57200 unknown protein Lus10042032
[exp]
20.8 0.7189
AT1G31850 S-adenosyl-L-methionine-depend... Lus10033277
[exp]
20.9 0.7288
AT1G27200 Domain of unknown function (DU... Lus10010731
[exp]
21.0 0.7232
AT5G08160 ATPK3 serine/threonine protein kinas... Lus10034642
[exp]
21.4 0.7792
AT4G33140 Haloacid dehalogenase-like hyd... Lus10039915
[exp]
22.4 0.7122

Lus10009165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.