Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38360 298 / 4e-101 alpha/beta-Hydrolases superfamily protein (.1) AT2G23620 50 / 6e-07 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23600 49 / 1e-06 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT3G29770 49 / 3e-06 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT2G23610 47 / 7e-06 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT4G09900 47 / 2e-05 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT4G16690 44 / 6e-05 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT4G02340 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G33990 44 / 8e-05 ATMES14 methyl esterase 14 (.1) AT1G69240 44 / 0.0001 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028478 [exp] 643 / 0 AT5G38360 298 / 2e-101 alpha/beta-Hydrolases superfamily protein (.1) Lus10013193 [exp] 50 / 1e-06 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10030707 [exp] 48 / 5e-06 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10015532 [exp] 47 / 8e-06 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10037068 [exp] 47 / 1e-05 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10012854 [exp] 44 / 4e-05 AT2G23600 147 / 2e-45 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10020663 [exp] 45 / 7e-05 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10023326 [exp] 44 / 7e-05 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10036917 [exp] 45 / 9e-05 AT1G26370 650 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099300 [exp] 503 / 4e-180 AT5G38360 316 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G096900 [exp] 51 / 7e-07 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 50 / 1e-06 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.019G063900 [exp] 49 / 3e-06 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G037300 [exp] 47 / 6e-06 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.014G127200 [exp] 47 / 2e-05 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G107500 [exp] 46 / 2e-05 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 46 / 2e-05 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.002G202700 [exp] 45 / 4e-05 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G107200 [exp] 45 / 5e-05 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10009166 pacid=23150051 polypeptide=Lus10009166 locus=Lus10009166.g ID=Lus10009166.BGIv1.0 annot-version=v1.0 ATGTCTGGTAAATGGGATGATCACAGTGAATACTTTGGATACGCAGCAATGGCGGCAGCTTCGCTGGTTGCTTTCTTTCAGCCAAACTTCATTTTGCCCC TCCCAGTACGACACACCAGGAGGACAAATGCTATCCTTTGCAGAAAAACCCACCAACAAATGCGGGTTCCTTACCAGTTGAAGCAAGGACAGAGCCGGGT TTTCCACCAGCTTCCTTCCGGACTCAACTTGGAGGTGATTGAGCACAAAAGAAACCTCGCAACAGCTGAAAGCCAAAATAAGCCACCTTTGGTTTTCGTT CACGGAAGCTATCACGCAGCCTGGTGTTGGGCTGAGCATTGGTTGCCCTTCTTTTCAGCATCTGGCTTTGATTGCTATGCCATTAGCCTGTTGGGTCAGG GCGAAAGTGGTGCACCAAGTGGGTCTGTTGCTGGTACTCTACAGACACATGCTGGTGATGTTGCGGACTTCATCCAGAAAACGATCAACTCACCGCCCGT GTTGGTTGGACATTCATTTGGTGGCCTCATTATTCAGTACTATCTTGCAAAGGCAACATCTTTCGATACGAAAAAGCTGTATCCTCATCTTGCTGGGGCC GGGCTAATTTGCTCTGTACCGCCTTCCGGTAATAGTGGCTTGGTATGGCGGTATCTTTTTACCAAACCTGTCGCTGCTTTCAAGGTGACCCGCAGTTTAG CAGCTAAAGCCTTTCAAACTGATGTTGCTCTTTGTAAGGAAACATTTTTCACATCAACGATGGAGGATCATGTAGTGAAACGTTACCAAAATCTAATGAA AGAAAGTTCAAGGATGCCACTGTTTGATTTAAGGAAGCTAAACGTGTCACTCCCGGTTCCTTCAATCCCAAAGTCCTCTGCAAATGTCCTTGTGTTGGGT GCTAGTGACGACTTCATAGTGGATGCTCAAGGACTGAAGGAAACAGCAAGCTTTTATGGCGTGTCTCCTGTCTGCGTTGAAGGCGTTGCCCACGATATGA TGTTGGATTGTGAGTGGGAAAAGGGCGCTAGAGTGGTTTTGTCCTGGTTGAATGCTATAAACTGA
AA sequence Show only first row Show all	>Lus10009166 pacid=23150051 polypeptide=Lus10009166 locus=Lus10009166.g ID=Lus10009166.BGIv1.0 annot-version=v1.0 MSGKWDDHSEYFGYAAMAAASLVAFFQPNFILPLPVRHTRRTNAILCRKTHQQMRVPYQLKQGQSRVFHQLPSGLNLEVIEHKRNLATAESQNKPPLVFV HGSYHAAWCWAEHWLPFFSASGFDCYAISLLGQGESGAPSGSVAGTLQTHAGDVADFIQKTINSPPVLVGHSFGGLIIQYYLAKATSFDTKKLYPHLAGA GLICSVPPSGNSGLVWRYLFTKPVAAFKVTRSLAAKAFQTDVALCKETFFTSTMEDHVVKRYQNLMKESSRMPLFDLRKLNVSLPVPSIPKSSANVLVLG ASDDFIVDAQGLKETASFYGVSPVCVEGVAHDMMLDCEWEKGARVVLSWLNAIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	0	1
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	1.0	0.9676
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	3.5	0.9407
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	4.6	0.9379
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	5.5	0.9403
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	5.7	0.9376
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	6.7	0.9306
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	8.3	0.9217
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	8.8	0.9184
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	8.9	0.9295
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	9.2	0.9400

Compare expression of checked genes

Lus10009166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.