Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38380 375 / 6e-130 unknown protein AT2G04620 54 / 1e-07 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028477 [exp] 360 / 5e-125 AT5G38380 347 / 7e-120 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115200 [exp] 379 / 2e-131 AT5G38380 556 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009167 pacid=23150059 polypeptide=Lus10009167 locus=Lus10009167.g ID=Lus10009167.BGIv1.0 annot-version=v1.0 ATGATGTCTCCGAAACAAATTGGTGAAGATCGAGCCTCTTCCAATATCAGGCATACTCCATTGCAGATAATACATGTTATTGGAAACTTTCTGAGAATAT GGTCGGTTTACTCCATGTATCGATATTTGACTCAAACTGGAGCACCGGTAGTGCCTTCTATCATCAATGGTGTCATAACAGCTGTGTATTTTAGTATGTG GGGAAAAGGACTCAAGTCATGTGGGCCAGTACGGACCATCTTGGCAGAATATGCAGGTGCTGTTCTTGGTGTTTTATCAGCAGTATTATATGGGAGGGGA AGCCATGTATGGAAAAAGGATGTCCTGCAAGTGCTTATTGTGAAAAGGCATTGTTGGCTTAACTTGAGATTACCTTTCAAAGAAAACCTGGATACAGAAT CCCCTCCGGAAGAAGTCTTGGGTATGAAAGACATGATCGTTCCAATTATTGCTGGGATCTTATCAGCTTTAAGAAGGGTGATTGCACGGCGTGTTTCACT CAAGAACCAATTGAAAAGAAGGCTGCATGCTATAACAATCACCTCGGCTACATGTTTTCTTTTTCCTGTGGCTATGTGGGACTTCATGACGGGAGATGAT AGGAAAATACAACTTCCGTTTTCTGCTTGGACATTTGGGAGCTTTATTATTTTTGGAGTTATCTTGATATTCTACATTGACAGCATAGCAGAAGAAAGGC TGCATATGGTTTTCTCTTCTCCAAGACACTTAATGGTAGCTGGAGGTTGTATCATCGTTCTAGAGACCCTTTATAAGATGGACTTCTCTCTTCCAGGATT CATTGGATCTACGAGGCGACCGCTTTGGAACGTGGGAAGAAGGGTACTACTCAACACTTTGATCCAGCTGACGAAATATTGGAGGATGAGATGCACAAGT CGCCACTTCCTACTTGAACTGTGCGCCTCTGTGTCGCCGAAGGACACGAAACTTGATGAGCACAGCAAGGGTAGGGATATCAAGGAGAAGCTTCGTATTG CTGAATCTTGTGGGCAGGGGATCCAAGTGACGTAA
AA sequence Show only first row Show all	>Lus10009167 pacid=23150059 polypeptide=Lus10009167 locus=Lus10009167.g ID=Lus10009167.BGIv1.0 annot-version=v1.0 MMSPKQIGEDRASSNIRHTPLQIIHVIGNFLRIWSVYSMYRYLTQTGAPVVPSIINGVITAVYFSMWGKGLKSCGPVRTILAEYAGAVLGVLSAVLYGRG SHVWKKDVLQVLIVKRHCWLNLRLPFKENLDTESPPEEVLGMKDMIVPIIAGILSALRRVIARRVSLKNQLKRRLHAITITSATCFLFPVAMWDFMTGDD RKIQLPFSAWTFGSFIIFGVILIFYIDSIAEERLHMVFSSPRHLMVAGGCIIVLETLYKMDFSLPGFIGSTRRPLWNVGRRVLLNTLIQLTKYWRMRCTS RHFLLELCASVSPKDTKLDEHSKGRDIKEKLRIAESCGQGIQVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38380			unknown protein		Lus10009167 [exp]	0	1
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	4.0	0.8400
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Lus10042687 [exp]	6.0	0.8152
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	18.8	0.8226
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	24.5	0.7980
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	27.1	0.8188
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	33.0	0.8167
AT1G07830			ribosomal protein L29 family p...		Lus10032334 [exp]	33.7	0.8175
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	37.7	0.8152
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	50.6	0.7992
AT1G15420			unknown protein		Lus10030351 [exp]	59.7	0.7931

Compare expression of checked genes

Lus10009167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.