Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67080 228 / 7e-76 ABA4 abscisic acid (aba)-deficient 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028476 [exp] 398 / 8e-143 AT1G67080 248 / 8e-84 abscisic acid (aba)-deficient 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099500 [exp] 254 / 2e-85 AT1G67080 248 / 2e-83 abscisic acid (aba)-deficient 4 (.1) Potri.017G114900 [exp] 227 / 3e-75 AT1G67080 216 / 8e-71 abscisic acid (aba)-deficient 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009168 pacid=23150030 polypeptide=Lus10009168 locus=Lus10009168.g ID=Lus10009168.BGIv1.0 annot-version=v1.0 ATGGCAGCATTCTCCCTTCCTTCTTCTCCTCCTTCCCCGCTCAAGATTGATTATCCAAGGCAGGCTGCGAGTTCTATAAAGGCATTTCACAGAGCTCACA GACTTCCATCTTCGCTAAGGAGTAAAGGCACTGACTTATGCAGGGAATGGACCTTTTTGGGAGGTTCAACAATCTTTAATCAACCAAAACCAGTCAGGCC CTTTGCTCGTCAGAAAAGCTCAACCACAATTTATGCCTCATGGTGGACAAGCCCTCAAGCTGCAAGCCATGTGTTCACTTTTGGAACGGCAGCTGTTCTG CCGTTTTACACCCTCATGGTTGTAGCCCCAAAATCGCAACTGACGAGAAAGTCGGTAGAAAGTAGCATACCTTACATAGTGCTGGGGCTTTTGTATGCAT ATCTACTATGCCTGTCATGGACACCTGAACATTTCCAGCTAATGTTTGCTAGCAAATACTGGCTACCCGAGCTGCCGGGAATAGCAAAGATGTTCTCGAG CGAGATAACATTAGCTTCAGCATGGATTCACCTACTTACAGTAGATCTCTTTGCCGCCAGGCAGGTGTATAATGATGGGTTGGAGAATGGGATAGAGACT CGGCATTCGATATCTCTTTGCTTGCTCTTCTGTCCCGTGGGAATTGTCGCTCACTTCTTCACTAAAGCGCTAACCAAAGGTGCAGTGAAGTAG
AA sequence Show only first row Show all	>Lus10009168 pacid=23150030 polypeptide=Lus10009168 locus=Lus10009168.g ID=Lus10009168.BGIv1.0 annot-version=v1.0 MAAFSLPSSPPSPLKIDYPRQAASSIKAFHRAHRLPSSLRSKGTDLCREWTFLGGSTIFNQPKPVRPFARQKSSTTIYASWWTSPQAASHVFTFGTAAVL PFYTLMVVAPKSQLTRKSVESSIPYIVLGLLYAYLLCLSWTPEHFQLMFASKYWLPELPGIAKMFSSEITLASAWIHLLTVDLFAARQVYNDGLENGIET RHSISLCLLFCPVGIVAHFFTKALTKGAVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	0	1
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	2.2	0.8764
AT4G14385			unknown protein		Lus10011821 [exp]	5.9	0.8378
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	6.0	0.8582
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10023915 [exp]	7.7	0.8203
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	7.9	0.8335
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	7.9	0.8389
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	11.0	0.8265
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	13.3	0.8342
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	16.1	0.8345
AT3G28760			unknown protein		Lus10005250 [exp]	16.6	0.8238

Compare expression of checked genes

Lus10009168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.