Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16120 468 / 8e-167 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 346 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 257 / 9e-84 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 257 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 251 / 8e-82 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 247 / 2e-80 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 242 / 3e-78 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 236 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 235 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 206 / 4e-64 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017601 [exp] 540 / 0 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028475 [exp] 417 / 5e-148 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 407 / 3e-142 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 380 / 1e-132 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041441 [exp] 355 / 1e-121 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 350 / 2e-119 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 259 / 4e-84 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 252 / 3e-82 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 240 / 2e-77 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114800 [exp] 525 / 0 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G124000 [exp] 359 / 4e-123 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 249 / 1e-80 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 248 / 2e-80 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 242 / 2e-78 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 240 / 2e-77 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 237 / 3e-76 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 186 / 4e-56 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 176 / 1e-52 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 160 / 2e-46 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10009169 pacid=23150026 polypeptide=Lus10009169 locus=Lus10009169.g ID=Lus10009169.BGIv1.0 annot-version=v1.0 ATGGCCGCCCCGGTTCGGTTTCCGGAGATCGACGCTGACATCCGCCGAGTTGTGGATGGCGATATGGAGGAGGTCCTCGCCAGGCGAAAAGCTCGCGATG CCTTTAAGGATATCCAGCTTAACATTCCCCATCTCTTGTTTAAGACGCCAAGTGATGGGCTGAAAGTTGAAGAGGCATACGAAGTGAACTCTAGAGGACT TGAGATTTTCACCAAGAGATGGCTTCCAGAAGTTCCGAAAGCTTTGGTGTGCTTTTGTCATGAATTGTCTCGAGCAGGACTTGCGAGGAAGTTGGCCTTA GCTGGGTACGGTGTCTTTGCAATGGATTACCCTGGTTTTGGCCTCTCGGAAGGCCTTCACGGCTATATCCCAAGCTTCGATAGCCTTGTTGATGATGTTA TCGAGCACTATGATAAGGTCAAAGGGGATCCTGAGTTTCAAAATCTTCCGAGCTTCCTGTTCGGACAGTCCATGGGTGGAGCTGTAGTCCTCAAGCTTCA CCTGAAACAGCCAAATGCATGGAGCGGTGCAATTCTTGTTGCGCCCATGTGCAAAATTGCAGACGACATGGTTCCACCATGGGCCGTGAAGCAATTCCTC ATCGGGATAGCCAACTTCCTTCCGAAGCACAAGTTAGTACCACAGAAGGACTTAGCCGAGGCAGCATTCAGAGATTTGAAGAAGAGAGAAATGGCAGCAT ACAATGTCATTGCTTACAAGCACAAGCCACGACTAAGGACTGCCTTGGAGATGCTTAAAACCACCCAAGAGATCGAACAACGGCTGGAAGAAGTATCTTT GCCGCTGCTGATTCTGCACGGAGAGGCTGATATTGTGACTGACCCATCAGTAAGCAAGGAATTGCATGAGAAAGCAAAGAGTTCAGACAAGAACCTGAAG CTGTACAAAGATGCTTACCATTCTCTTCTGGAGGGTGAGCCTGATGAAACCATAATTCAAGTACTCAACGACATAATCAGTTGGTTGGACCAGCACTGCA AATGA
AA sequence Show only first row Show all	>Lus10009169 pacid=23150026 polypeptide=Lus10009169 locus=Lus10009169.g ID=Lus10009169.BGIv1.0 annot-version=v1.0 MAAPVRFPEIDADIRRVVDGDMEEVLARRKARDAFKDIQLNIPHLLFKTPSDGLKVEEAYEVNSRGLEIFTKRWLPEVPKALVCFCHELSRAGLARKLAL AGYGVFAMDYPGFGLSEGLHGYIPSFDSLVDDVIEHYDKVKGDPEFQNLPSFLFGQSMGGAVVLKLHLKQPNAWSGAILVAPMCKIADDMVPPWAVKQFL IGIANFLPKHKLVPQKDLAEAAFRDLKKREMAAYNVIAYKHKPRLRTALEMLKTTQEIEQRLEEVSLPLLILHGEADIVTDPSVSKELHEKAKSSDKNLK LYKDAYHSLLEGEPDETIIQVLNDIISWLDQHCK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	0	1
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	1.0	0.9852
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	3.0	0.9720
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	3.2	0.9739
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	6.2	0.9626
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	6.5	0.9668
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	6.7	0.9684
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	6.9	0.9666
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	6.9	0.9635
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	7.1	0.9539
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	7.1	0.9602

Compare expression of checked genes

Lus10009169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.