Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16110 152 / 1e-46 unknown protein AT3G02555 142 / 2e-43 unknown protein AT1G68490 132 / 1e-39 unknown protein AT1G13390 108 / 4e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028474 [exp] 306 / 2e-108 AT5G16110 160 / 8e-50 unknown protein Lus10033560 [exp] 229 / 9e-78 AT5G16110 136 / 3e-40 unknown protein Lus10017599 [exp] 210 / 2e-70 AT5G16110 137 / 8e-41 unknown protein Lus10041444 [exp] 134 / 6e-40 AT1G68490 180 / 5e-58 unknown protein Lus10034327 [exp] 105 / 3e-29 AT1G68490 149 / 1e-46 unknown protein Lus10027224 [exp] 94 / 9e-25 AT3G02555 84 / 2e-20 unknown protein Lus10038934 [exp] 76 / 3e-18 AT1G68490 71 / 4e-16 unknown protein Lus10027557 [exp] 53 / 7e-10 AT1G68490 64 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099800 [exp] 222 / 9e-75 AT5G16110 135 / 7e-40 unknown protein Potri.017G114700 [exp] 218 / 2e-73 AT5G16110 139 / 4e-41 unknown protein Potri.010G124400 [exp] 163 / 9e-52 AT1G68490 151 / 7e-47 unknown protein Potri.008G121000 [exp] 152 / 2e-47 AT1G68490 150 / 3e-46 unknown protein Potri.015G047100 [exp] 150 / 8e-47 AT1G68490 116 / 4e-33 unknown protein Potri.012G056500 [exp] 138 / 4e-42 AT1G68490 119 / 2e-34 unknown protein Potri.005G108633 [exp] 46 / 1e-06 AT5G16110 50 / 6e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009170 pacid=23150056 polypeptide=Lus10009170 locus=Lus10009170.g ID=Lus10009170.BGIv1.0 annot-version=v1.0 ATGAGTCAGTTCTATCTTCAGCAGAACGTCGTTGCCTCTTGTGATGAAGCAAGAGGTGGTGTATCAATGTCTGATCTCAGGGGTCCTGTTGTCTGCCCCA AGCCTCGGCGAGTTGGAATCCTAGCTAACAATCCCATCCGGCCTTTTAGGTGGCAGATGAGTCATCAATTGGATGGGAGTGATGCCACAGCCGGGGCTGA GCTTTTGGACATCATCCTCAAGAAGGATGATCATGGGGCTGAGAAGTCTGCCGCTCAGGTGGCCTCATCACCTCCATATTTTTGTGGGTCTCCTCCGGCC AGGGCTGCGAACCCGTTGATTAAAGATGCGCACTTTGGGGACGAGAAGGTTTTTGCGATGTCTCCGTTCGCAAGCCCTTCTCCCTCATCAGTGTTGTCTC CATCGGCACGCAAAGGAGGCTGTGCGAGGGTGAATTTTGGATTCAAGCCAGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTAAACAGGGATCGCCAGAA TTCAAGCATCCCTGCTATGGCTTAG
AA sequence Show only first row Show all	>Lus10009170 pacid=23150056 polypeptide=Lus10009170 locus=Lus10009170.g ID=Lus10009170.BGIv1.0 annot-version=v1.0 MSQFYLQQNVVASCDEARGGVSMSDLRGPVVCPKPRRVGILANNPIRPFRWQMSHQLDGSDATAGAELLDIILKKDDHGAEKSAAQVASSPPYFCGSPPA RAANPLIKDAHFGDEKVFAMSPFASPSPSSVLSPSARKGGCARVNFGFKPAAVRVEGFDCLNRDRQNSSIPAMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16110			unknown protein		Lus10009170 [exp]	0	1
AT5G16110			unknown protein		Lus10028474 [exp]	1.4	0.8921
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	1.7	0.8964
					Lus10024821 [exp]	2.4	0.8873
AT1G52320			unknown protein		Lus10035887 [exp]	2.8	0.8835
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	4.0	0.8388
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	4.5	0.8508
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	5.2	0.8385
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	6.5	0.8246
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	7.3	0.8448
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	10.0	0.8372

Compare expression of checked genes

Lus10009170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.