Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 80 / 5e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028472 [exp] 209 / 1e-70 AT5G57510 87 / 1e-22 unknown protein Lus10033559 [exp] 134 / 4e-41 AT5G57510 84 / 1e-21 unknown protein Lus10017598 [exp] 124 / 7e-37 AT5G57510 80 / 6e-20 unknown protein Lus10026228 [exp] 49 / 6e-08 AT5G57510 62 / 6e-13 unknown protein Lus10042441 [exp] 49 / 7e-08 AT5G57510 64 / 9e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094100 [exp] 77 / 7e-19 AT5G57510 107 / 5e-31 unknown protein Potri.006G273566 [exp] 62 / 5e-13 AT5G57510 75 / 4e-18 unknown protein Potri.006G273500 [exp] 62 / 5e-13 AT5G57510 75 / 4e-18 unknown protein Potri.018G006800 [exp] 45 / 1e-06 AT5G57510 61 / 1e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009171 pacid=23150014 polypeptide=Lus10009171 locus=Lus10009171.g ID=Lus10009171.BGIv1.0 annot-version=v1.0 ATGTCGAGCAGCAAATCGGAGCGGCGGTGGATTCTGTTTGGCCGGCTGAAGAAGGCGGTGAGCAAGTTGAGGATCCTGCTCAAGTTCGATCTCCACGTAT GGCGTTTGGCGGGTTCTCTACTCGCCTCTTCTTCTACCTCCTCCGGTCCTTCCCGAGTAATTAGCTTTGGCGGCGATGACCGGCCTGGATTGGCAGCGGT TGCGTTTGAGGATTACGATCCGGTACCTGATGATGACTCGGATTCCGAATGGCATTCCCCTCCGGTTGAAGTTACATCTCCTTCTGCGGCGTCGAGATCG GAGCTCCGTAGAACTATCAGCCGCCGAGCGTCGATGGAAGATGACATCGACAAGAAGGCGGAGATGTTTATAGCGAATTTCCGGCGGCAGCTTCGGATTG AGCGGCAGATCTCTCTGGATCTCAAGTATTGCCAGCAGAAGACGTGA
AA sequence Show only first row Show all	>Lus10009171 pacid=23150014 polypeptide=Lus10009171 locus=Lus10009171.g ID=Lus10009171.BGIv1.0 annot-version=v1.0 MSSSKSERRWILFGRLKKAVSKLRILLKFDLHVWRLAGSLLASSSTSSGPSRVISFGGDDRPGLAAVAFEDYDPVPDDDSDSEWHSPPVEVTSPSAASRS ELRRTISRRASMEDDIDKKAEMFIANFRRQLRIERQISLDLKYCQQKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57510			unknown protein		Lus10009171 [exp]	0	1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	6.0	0.7727
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	9.0	0.7497
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	12.1	0.7653
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	15.7	0.7388
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	16.6	0.7476
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	28.3	0.7158
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	31.5	0.7099
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	32.4	0.7377
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	37.0	0.7334
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	38.3	0.7388

Compare expression of checked genes

Lus10009171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.