Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38420 264 / 3e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT1G67090 263 / 6e-91 RBCS1A ribulose bisphosphate carboxylase small chain 1A (.1.2) AT5G38430 263 / 7e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38410 263 / 8e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028471 [exp] 362 / 4e-130 AT5G38420 265 / 1e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10017597 [exp] 310 / 1e-109 AT5G38410 271 / 2e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10033558 [exp] 309 / 3e-109 AT5G38410 272 / 1e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10005093 [exp] 190 / 3e-62 AT5G38420 186 / 3e-60 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10034357 [exp] 188 / 3e-61 AT1G67090 182 / 7e-59 ribulose bisphosphate carboxylase small chain 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114600 [exp] 259 / 1e-89 AT1G67090 292 / 2e-102 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.004G100000 [exp] 256 / 2e-88 AT1G67090 286 / 3e-100 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.018G091401 [exp] 194 / 6e-64 AT5G38410 183 / 1e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Potri.006G167901 [exp] 0 / 1 AT5G38410 0 / 1 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00101 [flax] [poplar] RuBisCO_small Ribulose bisphosphate carboxylase, small chain PF12338 [flax] [poplar] RbcS Ribulose-1,5-bisphosphate carboxylase small subunit
Representative CDS sequence Show only first row Show all	>Lus10009172 pacid=23150022 polypeptide=Lus10009172 locus=Lus10009172.g ID=Lus10009172.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTGATGTCTTCCTCCGGCGTCTCCACCGTCGGCAGAACCGCCGCAGTTCAAGCTAGCTTGGTCGCACCATTCAAGTCCTCCTCCTCCGCCT TCCCGGTCACCAAGAGGTCCTCCAACCGTTCTACCATCCCAAGCAACGGCAGCAGAGTCAAGTGCATGAAGGTGTGGCCACCAATTGGGTTGAAGAAGTA CGAGACACTGTCGTACCTTCCCCCGTTGTCTGAGGAGGCGTTGGCTAAGGAGGTTGACTACCTTCTCCGCATGGGGTGGGTTCCTTGCTTGGAATTCGAG TTGGAGCACGGTTTCGTGTACCGTGAGTACAACAGCTCGCCAGGGTACTACGACGGAAGGTACTGGACAATGTGGAAGCTGCCCATGTTTGGATGCACAG ACTCGTCGCAGGTGTTGAAGGAGCTCCAGGAGTGCGTCAAGGAGTACCCGACGGCCTTCGTCCGTATCATCGGATTCGACAACAAGCGTCAAGTGCAGTG TATCAGTTTCATCGCCGCCAAGCCCCCGGGCTTCTAA
AA sequence Show only first row Show all	>Lus10009172 pacid=23150022 polypeptide=Lus10009172 locus=Lus10009172.g ID=Lus10009172.BGIv1.0 annot-version=v1.0 MASLMSSSGVSTVGRTAAVQASLVAPFKSSSSAFPVTKRSSNRSTIPSNGSRVKCMKVWPPIGLKKYETLSYLPPLSEEALAKEVDYLLRMGWVPCLEFE LEHGFVYREYNSSPGYYDGRYWTMWKLPMFGCTDSSQVLKELQECVKEYPTAFVRIIGFDNKRQVQCISFIAAKPPGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	0	1
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	2.0	0.9598
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	2.8	0.9531
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	3.9	0.9513
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10007535 [exp]	4.0	0.9331
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10012200 [exp]	4.8	0.9248
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	4.9	0.9498
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	5.9	0.9493
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	8.1	0.9423
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	8.7	0.9341
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	8.8	0.9456

Compare expression of checked genes

Lus10009172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.