Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00480 890 / 0 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT5G08680 650 / 0 ATP synthase alpha/beta family protein (.1) AT5G08690 650 / 0 ATP synthase alpha/beta family protein (.1) AT5G08670 649 / 0 ATP synthase alpha/beta family protein (.1) AT1G20260 113 / 7e-27 ATPase, V1 complex, subunit B protein (.1) AT4G38510 112 / 2e-26 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G76030 112 / 2e-26 ATPase, V1 complex, subunit B protein (.1) AT1G78900 109 / 3e-25 VHA-A vacuolar ATP synthase subunit A (.1.2) ATCG00120 97 / 2e-21 ATCG00120.1, ATPA ATP synthase subunit alpha (.1) ATMG01190 91 / 3e-19 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034631 [exp] 647 / 0 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035264 [exp] 647 / 0 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034632 [exp] 601 / 0 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 598 / 0 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10032827 [exp] 578 / 0 ATCG00480 557 / 0.0 ATP synthase subunit beta (.1) Lus10032826 [exp] 272 / 2e-90 ATCG00480 219 / 2e-70 ATP synthase subunit beta (.1) Lus10035737 [exp] 113 / 2e-26 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10037321 [exp] 113 / 2e-26 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10033382 [exp] 113 / 3e-26 AT1G78900 1199 / 0.0 vacuolar ATP synthase subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G162800 [exp] 918 / 0 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.010G116600 [exp] 648 / 0 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.008G126600 [exp] 648 / 0 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.007G062122 [exp] 192 / 6e-60 ATCG00480 193 / 9e-61 ATP synthase subunit beta (.1) Potri.004G177500 [exp] 111 / 3e-26 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.009G137800 [exp] 111 / 3e-26 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.010G253500 [exp] 109 / 4e-25 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G005000 [exp] 108 / 8e-25 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.013G138000 [exp] 101 / 9e-23 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.007G062242 [exp] 89 / 9e-19 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009173 pacid=23154474 polypeptide=Lus10009173 locus=Lus10009173.g ID=Lus10009173.BGIv1.0 annot-version=v1.0 ATGATGAAAATCAATCCTACTACTCCCGATCCCGGGGTTTCCGTTTTTGAGAAAACAGACCTGGGGCGTATCGCTCAAATCATCGGACCAGTACTAGATG TATCTTTTCCCCGCGGAAAGATGCCTAATATTTACAATGCTCTCCTAGTTAAAGGTCAAGACTCCGCCGGTCCACAAATTAATGTGACTTGTGAAGTACA GCAATTATTAGGAAATAATAAAATTCGGGCTGTAGCTATGAGTGCTACAGATGGTTTAATGAGAGGAATGGAAGTGAGCGACACGGGAGCTCCTCTAAGT GTTCCGGTCGGTGGAGCAACTTTAGGACGAATTTTCAACGTGCTTGGAGAACCTATTGATGATTTAGGTCCGGTAGATACTTGCACAACATCCCCTATTC ATAGATCTGCGCCCGCCTTTATACAGTTAGATACAACATTAGCCATTTTTGAAACAGGAATTAAGGTAGTCGATCTTTTAGCCCCTTATCGCCGGGGCGG AAAAATCGGACTATTCGGGGGGGCTGGAGTAGGTAAAACAGTATTAATTATGGAATTAATCAACAACATTGCGAAAGCTCATGGGGGTGTATCCGTCTTT GGCGGAGTAGGCGAACGTACTCGTGAAGGAAATGACCTTTACAAGGAAATGAAAGAATCCGGTGTAATTAATGAAGAAAAAATTGCAGAATCAAAAGTGG CTCTAGTCTATGGTCAGATGAATGAACCGCCGGGAGCTCGTATGAGGGTTGGATTGACTGCCCTAACCATGGCGGAATATTTCCGAGATGTTAATGAGCA AGATGTACTTCTATTTATTGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAAGTATCCGCCTTATTGGGGAGAATGCCTTCCGCTGTGGGTTATCAA CCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAACGAATTACTTCTACCAAAGAGGGGTCCATAACTTCGATTCAAGCGGTTTATGTACCTGCAGACG ATTTGACTGACCCTGCTCCTGCCACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGGGGATTATCCGCTAAAGGGATCTATCCCGCAGTAGA TCCTTTAGATTCAACGTCAACTATGCTCCAACCGGAGATTGTCGGTGGGGAACATTATGAAACTGCACAAAGAGTTAAGCAAACTTTACAACGTTACAAA GAACTTCAGGACATTATAGCCATCCTGGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACGGTAGCAAGAGCACGCAAAATTGAACGTTTCTTATCAC AACCATTTTTCGTAGCAGAAATATTTACGGGTTCTCCGGGAAAATATGTCGGTCTAGCAGAAACTATAAGAGGTTTTAAATTTGTCCTTTCCGGAAAATT AGATAGTCTTCCTAAGCAGGCCTTTTATTTTGTAGGTAATATTGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAACAACTTGAAGAAATGA
AA sequence Show only first row Show all	>Lus10009173 pacid=23154474 polypeptide=Lus10009173 locus=Lus10009173.g ID=Lus10009173.BGIv1.0 annot-version=v1.0 MMKINPTTPDPGVSVFEKTDLGRIAQIIGPVLDVSFPRGKMPNIYNALLVKGQDSAGPQINVTCEVQQLLGNNKIRAVAMSATDGLMRGMEVSDTGAPLS VPVGGATLGRIFNVLGEPIDDLGPVDTCTTSPIHRSAPAFIQLDTTLAIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVF GGVGERTREGNDLYKEMKESGVINEEKIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQ PTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLSAKGIYPAVDPLDSTSTMLQPEIVGGEHYETAQRVKQTLQRYK ELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEIFTGSPGKYVGLAETIRGFKFVLSGKLDSLPKQAFYFVGNIDEATAKATNLEMENNLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	0	1
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	1.0	0.9997
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	1.4	0.9939
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	2.4	0.9881
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	3.5	0.9704
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	5.5	0.9567
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	6.0	0.9460
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	6.5	0.9406
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	7.3	0.9005
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	8.5	0.9128
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	11.4	0.8958

Compare expression of checked genes

Lus10009173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.