Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28830 225 / 9e-72 calcium-binding EF hand family protein (.1) AT4G38810 59 / 1e-09 Calcium-binding EF-hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015916 [exp] 506 / 0 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1) Lus10026291 [exp] 67 / 3e-12 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10042380 [exp] 63 / 8e-11 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2) Lus10007567 [exp] 60 / 8e-10 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 57 / 9e-09 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G052900 [exp] 338 / 5e-116 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.013G040500 [exp] 326 / 3e-111 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.009G127800 [exp] 64 / 3e-11 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) Potri.004G166900 [exp] 56 / 2e-08 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009175 pacid=23154481 polypeptide=Lus10009175 locus=Lus10009175.g ID=Lus10009175.BGIv1.0 annot-version=v1.0 ATGTCCGACGGAGGTCTCACCATCGTCGACGGAACCCAGCTCCGATCCCTCCACATCTCCTTCCCGGACTCCTCCGCCCACCCACTTACCGGCGCACAAG TCCTCGATTTAGCCGAATCGGCCGCTTCCAATTCACTCTTCCACCTCCCTTTGTCTCCCTCTCTCAAGTCCTCAGCTCTCAACCGCCTCAAGGTCCACGA TCCCACTGATTTCCGCCTTCAGGAGCTCACACTAGAATCTGCCACTGCCAAACTCAATGACTACATCACTGCCCTTGCCGATCAGCTCAAAGAGAAACCG ATGGTTGTTTCCATCCTGGATGGCAGCACTCTGAAGGTGTTTCTTGACGACGAGGATGATTTCGCGATGTTAGCCGAGAATGTGTTTACTGATTTGGATG AAGAAGACAAGGGAAAGATCAAGAAGATCGAGACAAGGAATGCGCTTCTTCGTATGGGAATTGAAACTGGGATTCCTCCTTTCGAAGAGTTCCCTGTCAT TAACGACATCTTGAAGAAACATGGGGTTGAGGAAGAGGGAGAGTTGGGCCAATCCCAATTTGCTGAGTTACTTCAGCCTATTCTGCAAGAAGTTGCTGAT GCGTTGGCAAAAAACCATGTTGTTGTTGTCCACGACACTGAGATAGTCAATGGTTCTAAACTCAGAAAGGTGTTGGCTGATGAGGAGCAGTTGAAGAGCA TGATTGGGAAGATAGTGGAGCAGAAGCATGAATCAGCAGGAGAAGCAGGAAGCAAGCAAGTAATAAGGAGTTTTCTTGACAAACATACAAAAGACCTTGG CTTGCCACCATCCGAAGCTAATGAAACAGTGAGCCTTGTTTATGATGCAGTTTTAGATGACGTGGACGCTGGAAAGTTTGATGTAGATGAAGATGACAAT TTCAGAGAACTTGTTAAGGAAATACTTGACAAACTTGCGGAGCAGCTCGAGGCCAACCCAATGTACTATAACATCTAA
AA sequence Show only first row Show all	>Lus10009175 pacid=23154481 polypeptide=Lus10009175 locus=Lus10009175.g ID=Lus10009175.BGIv1.0 annot-version=v1.0 MSDGGLTIVDGTQLRSLHISFPDSSAHPLTGAQVLDLAESAASNSLFHLPLSPSLKSSALNRLKVHDPTDFRLQELTLESATAKLNDYITALADQLKEKP MVVSILDGSTLKVFLDDEDDFAMLAENVFTDLDEEDKGKIKKIETRNALLRMGIETGIPPFEEFPVINDILKKHGVEEEGELGQSQFAELLQPILQEVAD ALAKNHVVVVHDTEIVNGSKLRKVLADEEQLKSMIGKIVEQKHESAGEAGSKQVIRSFLDKHTKDLGLPPSEANETVSLVYDAVLDDVDAGKFDVDEDDN FRELVKEILDKLAEQLEANPMYYNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28830			calcium-binding EF hand family...		Lus10009175 [exp]	0	1
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10042082 [exp]	3.5	0.7983
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	12.0	0.7854
AT2G19130			S-locus lectin protein kinase ...		Lus10039732 [exp]	12.8	0.7840
AT4G32020			unknown protein		Lus10001940 [exp]	16.0	0.7874
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	16.4	0.7682
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	19.2	0.7938
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	21.0	0.7795
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	24.3	0.7720
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	27.7	0.7803
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	29.2	0.7839

Compare expression of checked genes

Lus10009175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.