Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22930 187 / 2e-61 CML11 calmodulin-like 11 (.1) AT3G56800 186 / 3e-61 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 186 / 3e-61 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 186 / 3e-61 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 185 / 8e-61 CAM7 calmodulin 7 (.1) AT5G21274 183 / 3e-60 ACAM-6, CAM6 calmodulin 6 (.1) AT5G37780 181 / 2e-59 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 181 / 2e-59 ACAM-4, CAM4 calmodulin 4 (.1.2) AT4G14640 178 / 3e-58 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G51920 139 / 1e-42 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001775 [exp] 217 / 2e-73 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10039391 [exp] 186 / 5e-61 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 185 / 1e-60 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 185 / 1e-60 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 185 / 1e-60 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 185 / 1e-60 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 157 / 2e-49 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10014708 [exp] 151 / 2e-47 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014709 [exp] 151 / 2e-47 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159300 [exp] 188 / 4e-62 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.016G024700 [exp] 185 / 8e-61 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 185 / 8e-61 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 185 / 8e-61 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 186 / 9e-61 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 184 / 9e-61 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G080900 [exp] 184 / 1e-60 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 183 / 4e-60 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.005G052800 [exp] 177 / 9e-58 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 175 / 7e-57 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009176 pacid=23154465 polypeptide=Lus10009176 locus=Lus10009176.g ID=Lus10009176.BGIv1.0 annot-version=v1.0 ATGGAGGTTTTAACAGCAGCAGGTAATGGTACTGAAGTCCTGGGCCAAGACCAAATCCTCGAGTTTCATGAGGCATTTTACTTGCTCGACAAGGATGGAG ACGGCAGAATAACAATGGAAGAACTGGGAAGGGCGATGAAGTCGCTCGGGTTGCGTCCATCGGAGGGAGAGCTGCAAGAAATGATCAAGGAAGTGGATTG GGATGGGAATGGGAGCATTGAGTTTGAGGAGTTTTTGAGTCTCATGGCTTCCAAGCTGGAGGAGAAGCAGTCTGACCACCTCCAACTAAGAGAAGCTTTC ATAGTCTTTGATAAAGACCAAGATGGTTTCATTTCCCCTAATGAGCTGAGGCATGGGATGGTGAACGTTGGGGAGAGGATCACAGATGACGAGGTTGACC AAATGGTTAAGGAAGCCGATCTGGATGGAGATGGTCTCATTAGTTATCATGAATTTGTCCAAATGATGCTGGCTTCCTTCTCTTAA
AA sequence Show only first row Show all	>Lus10009176 pacid=23154465 polypeptide=Lus10009176 locus=Lus10009176.g ID=Lus10009176.BGIv1.0 annot-version=v1.0 MEVLTAAGNGTEVLGQDQILEFHEAFYLLDKDGDGRITMEELGRAMKSLGLRPSEGELQEMIKEVDWDGNGSIEFEEFLSLMASKLEEKQSDHLQLREAF IVFDKDQDGFISPNELRHGMVNVGERITDDEVDQMVKEADLDGDGLISYHEFVQMMLASFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	0	1
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	7.9	0.9164
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	11.0	0.9184
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	12.5	0.9106
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	12.7	0.9075
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	13.4	0.9033
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	13.4	0.9082
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	21.4	0.9026
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	21.6	0.9115
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	23.5	0.8702
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	30.9	0.9077

Compare expression of checked genes

Lus10009176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.