Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49570 769 / 0 ATPNG1 peptide-N-glycanase 1 (.1) AT5G16630 47 / 5e-05 ATRAD4 DNA repair protein Rad4 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015918 [exp] 154 / 9e-44 AT5G49570 122 / 2e-33 peptide-N-glycanase 1 (.1) Lus10004055 [exp] 50 / 8e-06 AT5G16630 771 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10002285 [exp] 49 / 1e-05 AT5G16630 668 / 0.0 DNA repair protein Rad4 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039600 [exp] 899 / 0 AT5G49570 834 / 0.0 peptide-N-glycanase 1 (.1) Potri.004G087400 [exp] 45 / 0.0002 AT5G16630 786 / 0.0 DNA repair protein Rad4 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF01841 [flax] [poplar] Transglut_core Transglutaminase-like superfamily
Representative CDS sequence Show only first row Show all	>Lus10009179 pacid=23154472 polypeptide=Lus10009179 locus=Lus10009179.g ID=Lus10009179.BGIv1.0 annot-version=v1.0 ATGGCCGCTCGGAGATTCTCAGTCACCTGCAACGGCTCCACTTTCGATGTCGCTTACGACGCTGGAGACGGCTTAGAGGTTTTCAAGTTCCAGCTCTTTT CCCTCACCTCAATCCCTCCCGACCAGCAAAAGATCATCGGGGAAGAGGACGGTTCCATTTTATCGGAGGATTCCGATCTCTTGTCCGTGTCTGAGAAGCT CCAATTACTGTCGATCGACCACGAAAAATCTAAGGAGAAGTCCGATGTGAAAGAACAACCCGTCAGTGCCGTCGATGTTGATGTTTTACTGAAATCTGAC GAGGAAATGGCGAAAATGCTTCAGGCTGAGGAGGAGGCGCTTATGGTACAACAGTTTGTTGCAACTGAACAGAGTGAGCAGTTTGAAGAGAGGCTACGAC CCTATGTTGATAAAATATTTCTGTATGAGGATCCAGTACGCCAGGATGCAGCACAAAAGACTGTCCCTATTGATGAACTTGAGGAGAAGGCATTGGTTTC TTTGGCCAAGGAAGGGAATTTTAAGCCGATAAAGGCTGAACTTGACCATGCATTCCTACTGCAACTGCTATTCTGGTTCAAACAATCATTCAGGTGGGTC AATGCGCCTCCATGTGACTCATGTGGAAATAATACTGTTAGTCAAGGAATGGGTGTTCCTCTTCCATCAGAAACAAAATATGGAGGGACTAGAGTTGAAC TTTACCGTTGCAATTCTTGTTCAACCACTTCACGTTTTCCACGCTATAATGACCCCTTAAAGCTCTTGGAAACTCGAAGAGGTCGATGTGGGGAATGGGC TAACTGCTTCACACTATACTGTCGTGCTTTTGGCTATCAGACACGTCTGATTCTTGATTTTACTGACCATGTTTGGACAGAGTGCTACTCTGATATCTTA GGAAGATGGATGCATCTTGACCCCTGTGAAGCTGTCTATGACAAACCATTATTATATGAGAAGGGGTGGGGTAAGAAATTGAGTTATGTTATTGGTTTCT CGAAAGATGGAGTCTGTGATGTCACAAAACGTTACACTACAAAGTGGCCAGAGGTGTTGTCACGACGGAACATTACTACTGAGCACACTGTATCTGTTGC TGTCACTAAATTGACCAAAGAATGCCGAAGAAACTTCACTTCTCAGGTGTTATCTTTGCTTGAAGTCCGCGACAAGAGTGAGTCAGATGAATTTGGAAGA GGTTTAAATTTAAGAGAGGATTTGTCTGTGTCGTTACCAGGAAGACAAAGTGGAGATAAGGAATGGCGAATTTCAAGATCAGAAATTGGCCGTGACGAGA ATGATTCTATAAGTTGCTCCTCTTGCCCTACTCGCATATGCATTGATGAGCATGTGACTAGGGTTTACGATGCAATTGCTTGCCTACTTTCTCAATGTGC TGAAAATTCTCTTCCTAGGTCCAAGGTCACTGAAATGGTGAATGTCTTCAAGAAGATGCTGGTTGATGTCAGAATTTCTCCACATAAGACTAGGAGAATA ACTGTGAACCCGTTTCTAATGCTTTTTTTTTCATATTTCAATGAGTTACTTTGTGCGCTTTCTCTGAAGATCAATATCGATGGTGATGGTAAAGTTGGCT TATGTCTGGCTGAGGAACCTGTCTACACATCATTGGCATTGCCTGTTGTTTTGGATGCATTGGATGATACAATTAATAATCTAGACAAGCTCGACCACTT GGACAGACCTTCCATCACGCTACCACTATCTAAACCGAACCGGATCCATTCAGGTCTAGTCCTTGCAAGTGGTGAAGAATTCCCTTTTGGAATCGTCACC TCAGCTTTTGATGGACTACAGACATCTAAATGGGAAGAGCCAAATGGTGGAAGAGGTGGGTGGATCTTGTATAGTCTTAAAGACAGCAAGAAGTGTGAAC TAGAAGCTTACGAGATCACATCAGCTAATGATGCCCCGGAGAGGGATCCAAAGGACTGGGTTGTTGAAGGGAGCGATGACAGTGGGTCCAGCTGGCATAT CTTGGATAGACGAACTTCAGAGTTGTTCGAAGATCGGTTTCAGTGTAGATCGTTTGAAGTTAGATTGAAAGGTCTGCCATGCAATGCCTTCAGAATCATG TGGTACAGCAAGCTTACAAGGAAGAGGATTCAGTTGACTTCATATCTAACTGAGCCTTGA
AA sequence Show only first row Show all	>Lus10009179 pacid=23154472 polypeptide=Lus10009179 locus=Lus10009179.g ID=Lus10009179.BGIv1.0 annot-version=v1.0 MAARRFSVTCNGSTFDVAYDAGDGLEVFKFQLFSLTSIPPDQQKIIGEEDGSILSEDSDLLSVSEKLQLLSIDHEKSKEKSDVKEQPVSAVDVDVLLKSD EEMAKMLQAEEEALMVQQFVATEQSEQFEERLRPYVDKIFLYEDPVRQDAAQKTVPIDELEEKALVSLAKEGNFKPIKAELDHAFLLQLLFWFKQSFRWV NAPPCDSCGNNTVSQGMGVPLPSETKYGGTRVELYRCNSCSTTSRFPRYNDPLKLLETRRGRCGEWANCFTLYCRAFGYQTRLILDFTDHVWTECYSDIL GRWMHLDPCEAVYDKPLLYEKGWGKKLSYVIGFSKDGVCDVTKRYTTKWPEVLSRRNITTEHTVSVAVTKLTKECRRNFTSQVLSLLEVRDKSESDEFGR GLNLREDLSVSLPGRQSGDKEWRISRSEIGRDENDSISCSSCPTRICIDEHVTRVYDAIACLLSQCAENSLPRSKVTEMVNVFKKMLVDVRISPHKTRRI TVNPFLMLFFSYFNELLCALSLKINIDGDGKVGLCLAEEPVYTSLALPVVLDALDDTINNLDKLDHLDRPSITLPLSKPNRIHSGLVLASGEEFPFGIVT SAFDGLQTSKWEEPNGGRGGWILYSLKDSKKCELEAYEITSANDAPERDPKDWVVEGSDDSGSSWHILDRRTSELFEDRFQCRSFEVRLKGLPCNAFRIM WYSKLTRKRIQLTSYLTEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	1.4	0.8918
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	2.8	0.8851
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	5.1	0.8632
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	6.0	0.8862
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	7.4	0.8822
AT2G34750			RNA polymerase I specific tran...		Lus10005701 [exp]	9.6	0.8381
AT1G52320			unknown protein		Lus10035887 [exp]	10.2	0.8606
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	11.2	0.8670
AT4G31860			Protein phosphatase 2C family ...		Lus10026885 [exp]	13.3	0.8602
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	14.2	0.8756

Compare expression of checked genes

Lus10009179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.