Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32080 444 / 1e-158 PUR ALPHA-1, PURALPHA-1 purin-rich alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001782 [exp] 470 / 1e-168 AT2G32080 425 / 4e-151 purin-rich alpha 1 (.1.2) Lus10001781 [exp] 422 / 8e-150 AT2G32080 374 / 3e-131 purin-rich alpha 1 (.1.2) Lus10020245 [exp] 366 / 8e-129 AT2G32080 327 / 6e-114 purin-rich alpha 1 (.1.2) Lus10015921 [exp] 339 / 2e-117 AT2G32080 363 / 5e-127 purin-rich alpha 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224000 [exp] 481 / 6e-173 AT2G32080 458 / 2e-164 purin-rich alpha 1 (.1.2) Potri.001G000700 [exp] 469 / 1e-168 AT2G32080 447 / 5e-160 purin-rich alpha 1 (.1.2) Potri.013G061100 [exp] 167 / 1e-49 AT2G32080 162 / 9e-48 purin-rich alpha 1 (.1.2) Potri.019G032001 [exp] 44 / 1e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF04845 [flax] [poplar] PurA PurA ssDNA and RNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10009182 pacid=23154470 polypeptide=Lus10009182 locus=Lus10009182.g ID=Lus10009182.BGIv1.0 annot-version=v1.0 ATGGAGGGGAATTCTGGTGGTGGGGGAAACAGTGTTGGAGGAGGGGTAGTACCAGCACCAGCTGTGCAAGGAGCTCCCGGTGTTGCAGGTGGAGGAGGTG GAGGAGGCAACGATGTTGAGTTAATGTGCAAGACTCTTCAAGTAGAGCACAAGCTGTTCTACTTTGATCTCAAGGAGAACCCACGAGGCCGGTACTTGAA GATCTCCGAGAAGACTTCATCCACAAGGTCTACTATCATCGTTCCTTCCTCTGGGATATCCTGGTTCTTTGATCTCTTCAACTACTATGTCACTTCTGAT GAACACGAACTCTTCAGCAAAGAATTACAACAGGTGTTTTATTTCGACATTGGGGAAAATCGAAGAGGGCGCTTCCTTAAGGTCTCCGAAGCGTCTGTCA GTAGAAACCGCAGTACTATAATTGTTCCTGCTGGAAATTCTAGGGATGAAGGTTGGGCTTCTTTTAGAAACATTTTGGCTGAGATCAATGAAGCATCGAG GTTGTTTGTACTGCCCGATCAGCAACATTCTGAAACTTCGGAGCGCATTGTTGGGCTTTCGGACGACGTTGGTGCTGGCTTCATATCTGGGCATAGCAGC CAAACTGGTCCAACTTCAGAACTAAATACAGATCGAGCAGTTGAACTGCCAACACTAGATGAGATTGGCAAGCTGGGAGTGTCAAAGGTAATCCGAGCCG ATCAAAAAAGGTTCTTCTTCGATCTCGGGAATAACAATAGAGGCCATTTCTTGAGGATCTCCGAGGTAGCAGGTTCTGACAGATCATCCATAATTCTTCC ACTGTCTGGGCTGAAGCAGTTCCATGAAACAGTGGGTCACTTCGTGGAGATCACCAAAGACCGAATTGAGGGGATGGGGAGCGCAAACGTTCGAACTGTA GATCCCCCGCAAAGATGA
AA sequence Show only first row Show all	>Lus10009182 pacid=23154470 polypeptide=Lus10009182 locus=Lus10009182.g ID=Lus10009182.BGIv1.0 annot-version=v1.0 MEGNSGGGGNSVGGGVVPAPAVQGAPGVAGGGGGGGNDVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSSTRSTIIVPSSGISWFFDLFNYYVTSD EHELFSKELQQVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGNSRDEGWASFRNILAEINEASRLFVLPDQQHSETSERIVGLSDDVGAGFISGHSS QTGPTSELNTDRAVELPTLDEIGKLGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQFHETVGHFVEITKDRIEGMGSANVRTV DPPQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	0	1
AT1G27385			unknown protein		Lus10015781 [exp]	1.0	0.9237
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	4.5	0.8898
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	6.2	0.9182
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	6.6	0.9213
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	8.8	0.8786
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	9.4	0.8995
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	9.5	0.9052
					Lus10025501 [exp]	9.7	0.9110
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	11.3	0.9119
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	12.4	0.9047

Compare expression of checked genes

Lus10009182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.