Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54510 634 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 615 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 589 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 569 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G20860 369 / 1e-122 ATNEK5 NIMA-related kinase 5 (.1) AT3G44200 384 / 3e-122 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G12200 268 / 6e-82 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G69220 130 / 2e-31 SIK1 Protein kinase superfamily protein (.1.2) AT1G50240 129 / 8e-31 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT4G29810 122 / 4e-30 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015928 [exp] 1127 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 796 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 795 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 587 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10000148 [exp] 452 / 4e-158 AT1G54510 97 / 7e-23 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 372 / 1e-117 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 372 / 2e-117 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 353 / 8e-114 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 348 / 1e-108 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051600 [exp] 819 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 815 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.002G049400 [exp] 683 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G218100 [exp] 387 / 6e-123 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 377 / 1e-122 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 376 / 4e-122 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.009G020100 [exp] 380 / 3e-120 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 361 / 2e-117 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 355 / 2e-115 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 125 / 1e-29 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009186 pacid=23154477 polypeptide=Lus10009186 locus=Lus10009186.g ID=Lus10009186.BGIv1.0 annot-version=v1.0 ATGGACCAGTACGAAGTACTTGAACAAATCGGAAAGGGGTCATTCGGCTCTGCTCTTCTTGTGAGACACAAGCATGAAAAGAAGAAGTATGTGTTGAAAA AGATCCGCCTCGCCCGTCAAACTGATAGGTCACGTCGATCAGCTCATCAGGAGATGGAGCTGATTTCCAGAATACGAAATCCTTTCATTGTAGAGTACAA AGATTCCTGGGTTGAAAAGGGTTGCTATGTATGCATAATCATAGGATATTGTGAAGGAGGAGACATGGCGGATGCTATAAAGAAAACCAATGGCGTGCTT TTCTCCGAAGAGAAGCTATGCAAGTGGGTTGTCCAACTTCTCATGGCACTTGACTACTTACACATGAATCACATTCTTCATCGTGATGTTAAGTGTTCCA ACATATTCTTGACAAAAGGTCAAGACATTCGTCTTGGTGATTTTGGACTCGCCAAAATTTTGACCTCTGATGACCTTGCTTCGTCAGTTGTGGGAACTCC AAGTTACATGTGCCCGGAGCTTCTTGCTGACATACCTTATGGTTCAAAATCAGATATTTGGTCTTTAGGCAAGCAGACTGATATGCAAGCTCTGATTAAC AAAATAAATAGATCCATAGTATCTCCACTTCCAACTAAATATTCTGGTGCTTTTCGAAGTCTTGTGAAAAGCATGCTGCGGAAGAATCCAGAACTGAGGC CAACAGCTGCGGAGCTGCTAAGGCATCCTCATCTGCGACCTTATGTTCATAAGATACATGTCAAGATCAATAGCCCAAGAGGAGATACATTACCTTACCA ATGGCCCGACAACAACTATATGAAAACGAGGTTTTTGGATACAGTAATGGCTCCAAGCACCTACTCAGAGAAGAAACGGCATTCGTTCTGCAATAGGATG CTAAATCCAAGCATATCTGCCACAGAACAAGACTCTATCTGCTCCACCATAGCGATGCATCAGGATACACCCAGTTACGTAAACCGCAGGATGTCCGACA TCTCTCTCGGTAGCAGTCGTGCAACTGTGATCTGTAAGTCCATCACTTCGAAACCTTCAAATATCACCACAACTCGGAAAGTTGCTGCTTCCAGAGCTTC TCCTGTTCCTAAGAGACAGCCAGACCCTGTGAGAAAGCGCGAATCTTTTCCTGCGGCTTCCACCCAGACCAAAAGGTCTGTTATTACAAGCCGAAGAGCA TCTCTTCCTATAGCGACGAAAGCTACAAGACAAAATCCTGCTTGCCGTCCCAGTGTTGGCATCCTCCAGAGCTTGAAGTCCCCTGACGTCTCTGTCAATG CTCCTCGAATTGACAGGATAGCTGAATTCCCGTTAGCTTCATATGAAGAGACATTCTTCCCAGTCCACAGAACTTCACCAACTTTGGCACAAGGATCCTC AGTTTCGCCTCGACATGCAGACTGCTCGATCACCAAGGACAAATGCACTATTCAGACATGCGACACAAACTACTCTGCCAAGCCGTTAGGTGGTGTTGCG GATGTATGGCAAGGTATAAACTTCAGCATATTCAAGCAAGTAGATGAAGAAGAGAACGGAAGCAACTCCTCTAACCAAAATGCAACTGGTGGAGCCTCGA GCCGGACCACCTCCTCAGATACAAGGCGCCGCAGGTTTGACACGTCTTCGTACCGGCAGCGTGCGGATGCTTTGGAGGGATTGCTGGAGTTCAGTGCGAG GCTGCTGATTGACGAGAGGTATGATGAACTTGGGGTGTTACTGAAGCCATTTGGACCTGGGAAAGTTTCGCCAAGAGAAACTGCAATCTGGCTGACCAAA AGCATAAAAGAGAATACCGCAAAAGGGGAAGATCAATGA
AA sequence Show only first row Show all	>Lus10009186 pacid=23154477 polypeptide=Lus10009186 locus=Lus10009186.g ID=Lus10009186.BGIv1.0 annot-version=v1.0 MDQYEVLEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRSRRSAHQEMELISRIRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMADAIKKTNGVL FSEEKLCKWVVQLLMALDYLHMNHILHRDVKCSNIFLTKGQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGKQTDMQALIN KINRSIVSPLPTKYSGAFRSLVKSMLRKNPELRPTAAELLRHPHLRPYVHKIHVKINSPRGDTLPYQWPDNNYMKTRFLDTVMAPSTYSEKKRHSFCNRM LNPSISATEQDSICSTIAMHQDTPSYVNRRMSDISLGSSRATVICKSITSKPSNITTTRKVAASRASPVPKRQPDPVRKRESFPAASTQTKRSVITSRRA SLPIATKATRQNPACRPSVGILQSLKSPDVSVNAPRIDRIAEFPLASYEETFFPVHRTSPTLAQGSSVSPRHADCSITKDKCTIQTCDTNYSAKPLGGVA DVWQGINFSIFKQVDEEENGSNSSNQNATGGASSRTTSSDTRRRRFDTSSYRQRADALEGLLEFSARLLIDERYDELGVLLKPFGPGKVSPRETAIWLTK SIKENTAKGEDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	1.0	0.9902
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	5.5	0.9451
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	6.9	0.9287
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	7.4	0.9250
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	7.5	0.9301
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	9.2	0.9400
AT1G73380			unknown protein		Lus10031316 [exp]	9.2	0.9168
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	10.6	0.9171
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	10.7	0.9322
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	11.1	0.9333

Compare expression of checked genes

Lus10009186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.