Plant FIBer expression Database

Lus10009187 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14750 53 / 2e-07 IQD19 IQ-domain 19 (.1)
AT4G23060 47 / 1e-05 IQD22 IQ-domain 22 (.1)
AT5G07240 45 / 7e-05 IQD24 IQ-domain 24 (.1)
AT1G72670 44 / 0.0002 IQD8 IQ-domain 8 (.1)
AT3G16490 43 / 0.0003 IQD26 IQ-domain 26 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015930
[exp]
358 / 5e-121 AT4G14750 97 / 4e-22 IQ-domain 19 (.1)
Lus10006613
[exp]
57 / 2e-08 AT4G14750 295 / 6e-96 IQ-domain 19 (.1)
Lus10021904
[exp]
56 / 5e-08 AT4G14750 314 / 2e-103 IQ-domain 19 (.1)
Lus10041188
[exp]
49 / 4e-06 AT4G14750 288 / 2e-93 IQ-domain 19 (.1)
Lus10005760
[exp]
49 / 6e-06 AT5G07240 219 / 3e-67 IQ-domain 24 (.1)
Lus10027435
[exp]
47 / 2e-05 AT5G62070 207 / 3e-62 IQ-domain 23 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G038901
[exp]
76 / 7e-15 AT4G14750 128 / 2e-33 IQ-domain 19 (.1)
Potri.005G051500
[exp]
63 / 1e-10 AT4G14750 127 / 6e-33 IQ-domain 19 (.1)
Potri.008G156700
[exp]
60 / 2e-09 AT4G14750 307 / 6e-101 IQ-domain 19 (.1)
Potri.010G082600
[exp]
57 / 2e-08 AT4G14750 261 / 2e-83 IQ-domain 19 (.1)
Potri.012G139800
[exp]
50 / 2e-06 AT5G07240 137 / 3e-36 IQ-domain 24 (.1)
Potri.015G142200
[exp]
47 / 2e-05 AT5G07240 138 / 3e-36 IQ-domain 24 (.1)
Potri.001G190500
[exp]
42 / 0.001 AT3G16490 293 / 5e-96 IQ-domain 26 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0220 EF_hand PF00612 IQ IQ calmodulin-binding motif
Representative CDS sequence
>Lus10009187 pacid=23154473 polypeptide=Lus10009187 locus=Lus10009187.g ID=Lus10009187.BGIv1.0 annot-version=v1.0
ATGGGAAAGGCAGGGAAATGGGTGATGAATTTCCTTCTGGGGAAGAAAGAAGGCAAGAAGGGGAGGAAAACTGCAGACCCAAATGGAATCCCTGTTTCCA
AAGAAGATTTCAGTATTGAAGTAGCAAGTCATCAACCTCCAACTCCATCCAACGGCCACAGGAGGAGATGGAGTTTTGGCAAGTCATCAAGCAAAGACAT
TTCTTCTTCTTCTGAGAGGCATAATAGCAGCAGCAGCTTCAACCCTCTTTACCACACCTCCTCGGAAGCCATCTCGCAGTTTGTCAAAGCTTCGTCTGTT
GGGAGCAGTAGTGATGCTGTAGCATTGGCTTTGCATGAAGCTGCTGCTAGCGTTATCAGGTTTTCCCATCCTTCATCGTCCCTAGCTACAGATAGACGAC
TGATCAAGATTGTCTCTGTTGAACATGCAGCTGCCACCCGGATCCAATCCGTCTTTCGTTCATACCTGGCAAAGAAAGCATTGGGTGCACTAAAGGGATT
GGTGAAGTTGCAAGCAGTAGCTAGAGGGCATTTAGTGAGGAAACACATGAGTGCCACTATCAGGAAGATGCATGCTGTTATGTCTATTCAAGTTAGAGCT
CGCTTTCACAGGATACAAACCACTACCCTTCATTCTTCTAACATTACTGCTGGACCTTCTTCCCACAACAATAAGAGGGATCCTTATAAAGAGAAGAAGT
CAAGCAGTTCAGAGAGAAAGTCGAAGGAAGAGGTGATAGTTAGCAGAAGCTATTCAGGGGAGCAGGAAGAACAGCGCTCATATGAGGAATCCTCTTATTA
CAAAGCTCCACAGAGAAGAGCCTCTTTCACTAACCACCAACCAAAGTATCCCAAGCATCAGGATTTATCTTCCCCGGAACCCAATTATATGTCAAAAACA
CAGTCATCCATGGCTAAAACCAGGTCTCACAGTGAGCCCAAACAGAGACCTCGAAGGAGTGTTTCGTCCAACTCCATCATCACCAGGGCATCGCCAACCA
GTGACGGAACAACAAACAGTGTGCAGGATGAGAGTCAGAGTCTGCAATTCCCATCATCGACTTCACAATCGGACAGGGTATCCTCCTCCCACGAACAATG
GTTCGTCAAGCTCTACCGACCCCCGACACCCTTGGATGCAGACTATTATCCCATAGGCAGCGACAGAAAAATCCTTGTCGCCTGCGAGGTAAAGTTGCAA
CCTTTTTTCCTGATTGGTTTCTGCAGTGTAATGGGTTTCTCAGTGATTTGCCTCCTCGTTTTGCAGCCTCACTTGAATCTCTACTGA
AA sequence
>Lus10009187 pacid=23154473 polypeptide=Lus10009187 locus=Lus10009187.g ID=Lus10009187.BGIv1.0 annot-version=v1.0
MGKAGKWVMNFLLGKKEGKKGRKTADPNGIPVSKEDFSIEVASHQPPTPSNGHRRRWSFGKSSSKDISSSSERHNSSSSFNPLYHTSSEAISQFVKASSV
GSSSDAVALALHEAAASVIRFSHPSSSLATDRRLIKIVSVEHAAATRIQSVFRSYLAKKALGALKGLVKLQAVARGHLVRKHMSATIRKMHAVMSIQVRA
RFHRIQTTTLHSSNITAGPSSHNNKRDPYKEKKSSSSERKSKEEVIVSRSYSGEQEEQRSYEESSYYKAPQRRASFTNHQPKYPKHQDLSSPEPNYMSKT
QSSMAKTRSHSEPKQRPRRSVSSNSIITRASPTSDGTTNSVQDESQSLQFPSSTSQSDRVSSSHEQWFVKLYRPPTPLDADYYPIGSDRKILVACEVKLQ
PFFLIGFCSVMGFSVICLLVLQPHLNLY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14750 IQD19 IQ-domain 19 (.1) Lus10009187
[exp]
0 1
AT1G16310 Cation efflux family protein (... Lus10009598
[exp]
7.0 0.9302
AT2G36780 UDP-Glycosyltransferase superf... Lus10016268
[exp]
13.0 0.8995
AT1G72890 Disease resistance protein (TI... Lus10006929
[exp]
13.7 0.9182
AT2G40200 bHLH bHLH051 basic helix-loop-helix (bHLH) ... Lus10013917
[exp]
14.4 0.9141
AT1G19630 CYP722A1 "cytochrome P450, family 722, ... Lus10025991
[exp]
15.6 0.9106
AT1G19630 CYP722A1 "cytochrome P450, family 722, ... Lus10025990
[exp]
19.2 0.9052
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10001118
[exp]
19.7 0.8818
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10000426
[exp]
20.1 0.8817
AT5G42170 SGNH hydrolase-type esterase s... Lus10003720
[exp]
20.9 0.8358
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Lus10014412
[exp]
23.2 0.8968

Lus10009187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.