Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04820 847 / 0 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015931 [exp] 1292 / 0 AT3G04820 901 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051400 [exp] 867 / 0 AT3G04820 914 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01142 [flax] [poplar] TruD tRNA pseudouridine synthase D (TruD)
Representative CDS sequence Show only first row Show all	>Lus10009188 pacid=23154483 polypeptide=Lus10009188 locus=Lus10009188.g ID=Lus10009188.BGIv1.0 annot-version=v1.0 ATGTGGCAAGGGAATCTTCCTTCCGCTATAGTAACCGTCGCTGCTCGTTGCTTCATTTCGTCGTCGGCTGCTGCTCAAAAACCCTACCAGTTTTTCTCCT CCCTCGGAAGCTCAAAACTTCTTCGTAGCCCCATCACTGTTCCCACTTCGATATCTCTGATGTCTACAATAGACGAAGCCGACGTCGGAATCCTCTGCTA CATCTCTAAAACCCCAGGCTTCCGTGGCATTCTCAAGCAAAGGTACTCCGATTTCATTGTGAATGAAGTAGATACAGAAGGAAATGTGGTTCATTTGACG ACTTTGAATGCTCCGTCTCAAGAGGTTGTGGAGGAGAGTGAGACGAAGAAGTGTGATGAAGCAATCCAAGAGAGTTATGTATCTGAAATTCAGGCGTTTC GGTTACTTACCGGTGACTCTGATGCTGACCTTTTGGAAGGTTTGATCAATCAAGTCAATTCTGGAAGCGAAGATGGAATTTCACCGATAGTGCTCTCTGC GGATTATGATAAAGCACATCGAACGGCAGTGCATAATTTCTTCAAGGAGAAACTGAAGTTTCTTGTCACGGATACTGTTGATGGGCCGGATGCTTCCTCA AAGTGCATTCGTGTGAGATTGAATGGGGGCCATGGCAATGTTGGAAGAAGTTCAAGGAAACGCAAAGATAGAGGTGGTAAGGCCTTTGACAGTAGAGGTT CCAATAATTGGCCCGACCATCTCGGAAAATTCCTAAGGTTTCATCTGTACAAAGAGAACAAGGATACACAGGAAGCCATAGGTCTCATAGGGAATATGCT TGGTGTTCGGCCAAGGGCATTCGGGTTTTCAGGCACAAAAGATAAACGCTCCATCTCAACTCAAAGGGTTACCATCTTCAAGCAGCAGGCGAGTAAAGTA GCTGCCCTTAATGACCGGTTGATTGGTATTAAAGTTGGTGACTTCTGGCATGTCAATGAAGAACTTCTTCTCGGGCAGCTCTTGGGCAACAGATTCACAA TCACTTTAAGAGGAGTTGTTGCAGACTCTGATGAGACCATCAAAGAGTCTGCTGAGTCTTTGGGAAGGCATGGGTTCATCAACTATTTCGGTCTGCAGCG TTTTGGAAGTGGTTCCGTGGCAACGCATCTTGTTGGGGCAGCATTGCTTCGTGGAGAGTGGGAAAGTGCTGCAAGGGAATATTACAAGGAAACGAATGAC ATTGATGGAACCTTGAGGCAATTGCCACGCTATCTGACAGCTGAGAGAGCTGTTCTTCAGTGTTTGAAAAAATGTCCTGGAAATCACTTACAAGCCCTGA AAGCTATACCAAGGACTATGAGAATGATGTATGTACACAGTTACCAAAGCTATTTGTGGAACCATGCAGCAAGCATGAGATTCCAGAAATATGGAACACA AGTTGTTTTAGGAGACTTAGTATACCCTAAAGATGATGTAACAGAAAAGGAAACTGTGATTGACACATCTGAAATAGTGGTTGAAACTGAAGATGTTGAT AATTGCAGTTATTTAGATGAAGCTTCAGTGGCAGAGCTTCCGGAGAAAAAGAAACTCTTTGTTAAGGTCGTTACCGCAGAAGACCTCTCTGCTGGGAATT ATGCTATTGATGACATTGTCCTTCCAATGCCTGGGTCTAGAACTATTTTCCCGGCCAACGACATTTGTGAAGTCTACCAAGATTTGGCAAAGAAGGATGC CATCGGTTTAACTGAAAGTGTGCACAACGTCAAGGAATTCTCGATAACCAGCATGACAGGGAGTTATAGGCAAGTCTTTCAGAAGCCAAGGGACTTCGAG TGGCAGTTGCTGACATATACTGATTGCAATGCCCCGTTAGCAGAGACAGATATGGACAGGATTCTGAAGGATAAGGCTTTATGCAAAAGTGATAATAAAT TGGAAGATGGACTGTGCTTTGAAAATGGTGGTGAAGTTGACAGGAGTGAAGCAGAGCCAGTGAAATTGGAACCACCCCATTGCAACCCGGATTCGCTGGA AAAGCAATTAGCTCTCAAGTTGAGCTTCACTCTTCCAGCTTCATGTTATGCGACAATGGCCATACGAGAGTTGCTTAAAACATCAACATCAGTTGCCTTC CACAAAGCTTTGAATTAG
AA sequence Show only first row Show all	>Lus10009188 pacid=23154483 polypeptide=Lus10009188 locus=Lus10009188.g ID=Lus10009188.BGIv1.0 annot-version=v1.0 MWQGNLPSAIVTVAARCFISSSAAAQKPYQFFSSLGSSKLLRSPITVPTSISLMSTIDEADVGILCYISKTPGFRGILKQRYSDFIVNEVDTEGNVVHLT TLNAPSQEVVEESETKKCDEAIQESYVSEIQAFRLLTGDSDADLLEGLINQVNSGSEDGISPIVLSADYDKAHRTAVHNFFKEKLKFLVTDTVDGPDASS KCIRVRLNGGHGNVGRSSRKRKDRGGKAFDSRGSNNWPDHLGKFLRFHLYKENKDTQEAIGLIGNMLGVRPRAFGFSGTKDKRSISTQRVTIFKQQASKV AALNDRLIGIKVGDFWHVNEELLLGQLLGNRFTITLRGVVADSDETIKESAESLGRHGFINYFGLQRFGSGSVATHLVGAALLRGEWESAAREYYKETND IDGTLRQLPRYLTAERAVLQCLKKCPGNHLQALKAIPRTMRMMYVHSYQSYLWNHAASMRFQKYGTQVVLGDLVYPKDDVTEKETVIDTSEIVVETEDVD NCSYLDEASVAELPEKKKLFVKVVTAEDLSAGNYAIDDIVLPMPGSRTIFPANDICEVYQDLAKKDAIGLTESVHNVKEFSITSMTGSYRQVFQKPRDFE WQLLTYTDCNAPLAETDMDRILKDKALCKSDNKLEDGLCFENGGEVDRSEAEPVKLEPPHCNPDSLEKQLALKLSFTLPASCYATMAIRELLKTSTSVAF HKALN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	0	1
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	1.0	0.9362
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	6.9	0.8864
AT2G04235			unknown protein		Lus10025175 [exp]	9.1	0.9095
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	10.2	0.8859
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	10.8	0.8688
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	12.0	0.9074
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	12.8	0.9095
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	16.0	0.8806
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	17.7	0.8726
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	19.7	0.9007

Compare expression of checked genes

Lus10009188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.