Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04870 847 / 0 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT4G14210 223 / 1e-65 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015935 [exp] 1065 / 0 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10021967 [exp] 224 / 6e-66 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10041260 [exp] 226 / 8e-66 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10025080 [exp] 56 / 5e-08 AT4G14210 67 / 1e-11 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10024003 [exp] 45 / 0.0001 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050700 [exp] 919 / 0 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.013G037700 [exp] 916 / 0 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.014G148700 [exp] 223 / 2e-65 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.002G235200 [exp] 190 / 3e-53 AT4G14210 899 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.004G177400 [exp] 57 / 3e-08 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.008G170300 [exp] 43 / 0.0005 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10009190 pacid=23154480 polypeptide=Lus10009190 locus=Lus10009190.g ID=Lus10009190.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGATTCTGTTTCCCGCGAATTCCGTCTCTGGAACTAGAACTTGGGGGAAACCGGCCTTCTCATTTTCTGGCCGGCAGCGTTCGGCAGCTC AGGCTGTTAGGAGACTTCATGGGTCCTCTGTTCGCTCCGCTTTGGATTCCTTGGAGGCAAACGTCTCTGACATGCGTGTTAATGCTCCAAAGGGGTTGTT TCCACCTGAACCGGAACATTATAGGGGACCAAAGCTTAAGGTAGCTATCATTGGTGCCGGCCTTGCTGGGATGTCAACTGCTGTGGAGCTGTTGGATCAA GGGCACGAGGTCGATATATACGAATCAAGGACTTTCATTGGTGGTAAAGTCGGTTCTTTCGTTGATAAGGGTGGAAACCACATTGAAATGGGACTTCATG TTTTCTTTGGCTGCTACAACAACCTTTTCCGTTTAATGAAGAAGGTAGGAGCAGATAAAAATTTGCTGGTGAAGGAGCACTCTCACACATTCGTGAACAA GGGGGGTGATATTGGAGAACTTGATTTTAGATTCCCAGTTGGAGCTCCATTGCACGGGATTAATGCATTTTTAACCACGAATCAGCTTAAGACCTATGAT AAAGCAAGAAATGCTGTAGCTCTTGCACTAAGTCCAGTTGTAAGAGCCCTTGTAGACCCGGATGGAGCAATGCAAGATATCAGGAATCTGGACAGCATAA GCTTCTCAGACTGGTTTATGTCGAAAGGAGGCACACGAACAAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTGGGCTTCATTGATTGTGATAA CATCAGTGCTCGTTGCATGCTGACTATATTCTCCTTGTTTGCTACCAAGACCGAAGCCTCCCTACTTAGGATGCTCAAGGGCTCCCCAGATGTTTTCTTG AGTGGTCCCATCAGAAAGTACATCACAGACAGAGGAGGCAGGTTCCATCTGAGGTGGGGATGCAGGGAAGTTCTATACGACAAGTCTCCAGATGGTGAAA CATACGTGACTGGTCTCGCCATGTCGAAAGCTACTAATAAGAAAATTGTCAAAGCCGATGCTTATGTTGCAGCATGTGATGTCCCTGGAATAAAGAGACT GCTCCCATCTGAGTGGAGGGAATCCAAATTCTTCGACAACATCTATGAACTAGTAGGAGTGCCTGTTGTCACAGTTCAACTTAGGTACAATGGTTGGGTC ACAGAGATGCAGGATCTTGAGCGTTCGAGATGTGTTCTAACACCAGGTGATCCGTATATGCCTCTGCCAAATGATGAGATCATAAATAGAGTATCAAAGC AGGTTGGTGGGGCTGTTCTGAGTTTGTTCCCATCAGCCCAAGGTCTAGATGTCACCTGGTCATCTGTGGTAAAGATTGGCCAATCGTTGTACCGGGAAGG ACCTGGCAAAGATCCATTCCGGCCGGATCAGAAGACACCAGTGAAGAACTTCTTCCTTGCAGGTTCATACACAAAACAGGATTACATAGACAGTATGGAA GGAGCTACATTGTCCGGCCGCCAATCTTCAGCCTACATTTGTCAAGCCGGGGAAGAGTTGGTAGCTCTGAAGAAAAAGATTGCAGCAGCAGCAGCCATTG ATGAAGAAACTCAAGCAAGTTCAAAATCGGGCTCGGTCAGTGATGAACTCAGTCTTGTATAA
AA sequence Show only first row Show all	>Lus10009190 pacid=23154480 polypeptide=Lus10009190 locus=Lus10009190.g ID=Lus10009190.BGIv1.0 annot-version=v1.0 MAASILFPANSVSGTRTWGKPAFSFSGRQRSAAQAVRRLHGSSVRSALDSLEANVSDMRVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQ GHEVDIYESRTFIGGKVGSFVDKGGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKEHSHTFVNKGGDIGELDFRFPVGAPLHGINAFLTTNQLKTYD KARNAVALALSPVVRALVDPDGAMQDIRNLDSISFSDWFMSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVFL SGPIRKYITDRGGRFHLRWGCREVLYDKSPDGETYVTGLAMSKATNKKIVKADAYVAACDVPGIKRLLPSEWRESKFFDNIYELVGVPVVTVQLRYNGWV TEMQDLERSRCVLTPGDPYMPLPNDEIINRVSKQVGGAVLSLFPSAQGLDVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSME GATLSGRQSSAYICQAGEELVALKKKIAAAAAIDEETQASSKSGSVSDELSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	0	1
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	2.0	0.7626
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	2.4	0.7845
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	5.7	0.7858
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	7.7	0.7165
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	12.5	0.7828
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	13.4	0.7526
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	16.1	0.7447
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032544 [exp]	20.0	0.7620
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	28.3	0.7169
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	28.9	0.6603

Compare expression of checked genes

Lus10009190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.