Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54530 94 / 1e-25 Calcium-binding EF hand family protein (.1) AT2G44310 92 / 1e-24 Calcium-binding EF-hand family protein (.1) AT4G16350 44 / 5e-06 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT5G55990 42 / 2e-05 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT3G10300 40 / 0.0001 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT4G04740 38 / 0.001 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035578 [exp] 90 / 9e-24 AT2G44310 182 / 3e-60 Calcium-binding EF-hand family protein (.1) Lus10008649 [exp] 86 / 4e-22 AT2G44310 177 / 2e-58 Calcium-binding EF-hand family protein (.1) Lus10039098 [exp] 45 / 5e-06 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038764 [exp] 44 / 6e-06 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1) Lus10042037 [exp] 41 / 9e-05 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10033400 [exp] 40 / 0.0003 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10034860 [exp] 40 / 0.0003 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10018041 [exp] 40 / 0.0003 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10035435 [exp] 39 / 0.0006 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049900 [exp] 149 / 2e-47 AT1G54530 99 / 8e-28 Calcium-binding EF hand family protein (.1) Potri.001G231100 [exp] 92 / 1e-24 AT2G44310 221 / 2e-75 Calcium-binding EF-hand family protein (.1) Potri.014G161200 [exp] 91 / 5e-24 AT2G44310 143 / 1e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 84 / 2e-21 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218300 [exp] 81 / 2e-20 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G218201 [exp] 79 / 9e-20 AT2G44310 136 / 4e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 79 / 1e-19 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G219000 [exp] 79 / 1e-19 AT2G44310 137 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218800 [exp] 79 / 1e-19 AT2G44310 137 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 79 / 1e-19 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009192 pacid=23154464 polypeptide=Lus10009192 locus=Lus10009192.g ID=Lus10009192.BGIv1.0 annot-version=v1.0 ATGAGTCTTGCATTGATCAATGGAGCCACTGTGACCAATTTCATGGATGACAAGGGAGCATTCGAGACTTGCGTCAACGAATGCTTCGAAATGCTCGATG TTAAGGGGAACGGAGTCCTGACTCGGGAGGAGATGCGAGAAGAGTTTCGTAAGATTATAGCATCATCGTCGACATGCAAGAACGACAAAAGTAGCGATGC TCACGATGAGACCATTTACGATGCCATTTTTGAGAGATTCGACAAGGATAAAAATGGGAAGATAGATAGGGAAGAATTTAGAGCATTAATAATGGAGATC ATGTTCGCCATGGCCCGTGGTTTGGGCAACTCGCCGATGTTGGTGGCTCTGGATATTGATAGCTTACTTATGAAGGCATTTAAGCATGAGAACATGAAGG AATAG
AA sequence Show only first row Show all	>Lus10009192 pacid=23154464 polypeptide=Lus10009192 locus=Lus10009192.g ID=Lus10009192.BGIv1.0 annot-version=v1.0 MSLALINGATVTNFMDDKGAFETCVNECFEMLDVKGNGVLTREEMREEFRKIIASSSTCKNDKSSDAHDETIYDAIFERFDKDKNGKIDREEFRALIMEI MFAMARGLGNSPMLVALDIDSLLMKAFKHENMKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44310			Calcium-binding EF-hand family...		Lus10009192 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037734 [exp]	7.1	0.8072
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	7.4	0.8391
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	13.3	0.8182
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	18.3	0.8229
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	21.9	0.8217
					Lus10015426 [exp]	26.4	0.7695
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10002170 [exp]	28.0	0.8068
AT4G02920			unknown protein		Lus10042685 [exp]	36.7	0.7973
					Lus10029619 [exp]	38.4	0.7202
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016869 [exp]	38.4	0.7537

Compare expression of checked genes

Lus10009192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.