Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04890 196 / 9e-63 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) AT2G46100 69 / 1e-13 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015938 [exp] 332 / 4e-116 AT3G04890 223 / 8e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10007918 [exp] 64 / 4e-12 AT2G46100 289 / 2e-99 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10036387 [exp] 64 / 7e-12 AT2G46100 283 / 8e-97 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036500 [exp] 229 / 2e-75 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.013G037050 [exp] 74 / 2e-16 AT3G04890 78 / 1e-18 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.002G162800 [exp] 66 / 9e-13 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.014G092200 [exp] 42 / 0.0002 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10009193 pacid=23154482 polypeptide=Lus10009193 locus=Lus10009193.g ID=Lus10009193.BGIv1.0 annot-version=v1.0 ATGGCGGGAATTCTTTCATCCTCTCCGACCTCGACAATCACTCCCGCTCACATAATCTCGAAGAGAGCTCAACGATTTCCAATACGATGCAGCTCACCAT TAAGCGAACCACCGTACAACCAACGAACTAACAACAGCTCCGGCGGCGGGAATTCCGGGGGTGCCGAAACCAAAACCCCCAGCCTTCTGAAATTCGCGGT GAGTGGAGTCACCGAGATCCTCAGACTCTTCTCTTCTTCCGGTAAGGACCGAAAGGAGATGCCAGTTGTTACTGGTAAAAGTGATGAGGCCATTTCGGCA TTGAGCGTGGACGATGTTGTTAGGATATTCAGGAATGATTGCAAGAATGCTTATTTCATCACAGGCAGGAGTTTCACATCTGGACTCTATGTTGATGACT GTCTGTTTGAAGATCCAACTATCAGGTTCCGAGGTACTGATTTATATTCGCGCAACTTGAAGTTGCTGGTTCCTTTCTTTGACCATCCCTCCATTGAGTT ACAAAGCATTGACAAGGATGTGAATTCCAGGACAAACCTTGTACTTGGAACTTGGAAATTGAGAACATACCTGAGATTTCCATGGAGGCTGCTCATTTCA ATCGATGGAGTCACGGTCTACGAACTGAATGAAGACTTCCAGCACTCTGGTTCCGCTGCAGTATTCGCTAATAACAAACAAAACCACACATACTTGAATA ATCCAGATAGGCATACAGAGAGCTGGAACGTGTCTGCACTCGAAGCATTGGTGCAGATATTCACTCCAAGCTTTGACGATTAG
AA sequence Show only first row Show all	>Lus10009193 pacid=23154482 polypeptide=Lus10009193 locus=Lus10009193.g ID=Lus10009193.BGIv1.0 annot-version=v1.0 MAGILSSSPTSTITPAHIISKRAQRFPIRCSSPLSEPPYNQRTNNSSGGGNSGGAETKTPSLLKFAVSGVTEILRLFSSSGKDRKEMPVVTGKSDEAISA LSVDDVVRIFRNDCKNAYFITGRSFTSGLYVDDCLFEDPTIRFRGTDLYSRNLKLLVPFFDHPSIELQSIDKDVNSRTNLVLGTWKLRTYLRFPWRLLIS IDGVTVYELNEDFQHSGSAAVFANNKQNHTYLNNPDRHTESWNVSALEALVQIFTPSFDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04890			Uncharacterized conserved prot...		Lus10009193 [exp]	0	1
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	10.5	0.6784
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10029167 [exp]	43.1	0.6000
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	47.3	0.6511
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10023606 [exp]	49.5	0.6283
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	59.2	0.5997
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	62.1	0.6415
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	65.9	0.6223
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10037913 [exp]	66.5	0.5993
					Lus10017767 [exp]	83.6	0.5972
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	88.0	0.5894

Compare expression of checked genes

Lus10009193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.