Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15140 296 / 5e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005381 [exp] 75 / 4e-15 AT3G15140 90 / 3e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10024133 [exp] 75 / 5e-15 AT3G15140 91 / 6e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G141300 [exp] 355 / 4e-123 AT3G15140 397 / 6e-139 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G194300 [exp] 79 / 2e-16 AT3G15140 96 / 8e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G030900 [exp] 78 / 3e-16 AT3G15140 94 / 3e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10009194 pacid=23145598 polypeptide=Lus10009194 locus=Lus10009194.g ID=Lus10009194.BGIv1.0 annot-version=v1.0 ATGAGTGCAATCCCAACGTACAACATCCACCGGGCATCCAGATCCAAAACCCTAAACCCTAAGCTCACCGTTTTACGTGCCCTTTGCACCCAAAATTGCT CCTCCTCTCCTCCAACCTCCGTCAGTCCCAATCCCTCCGATGGCAGCAGTTACCGCTGGAAGCCAATGTGCTTGTACTACTCGCAAGGGAAATGCACCAA GATGGACGACCCTGACCATCTTCAGGTGTTCAATCATGATTGCTCTGAGGAATTCCGCGTGCTTCAACTCGACTTTGAACGCAAGCAGCCTCAAAAGTTT GATTTTCTCCTTGTGTTTGATTTGGAAGGCAAAGTGGAGATTCTTGAGTTCCCAGTGCTCTTAATCGACACCAAAACTATGACTGTAGTGGATTTATTTC ACAGTTTTCTTGTCTTAACTTTGATAACTAAGATTGCCAGGTTTGTGAGGCCTTCTGCAATGAACGAGGAAAGGGTAGACGAGTATATTGAGAATAAGTA TGGCAAGTTTGGAGTTGACCGTGGGAATTGGGATGTGAAAACTCAGGTTCCTCATCAATGCAAAGTGTCAAAGATGAAGCTTCCTCCATATTTTATGGAA TGGATCAATCTGAAAGATGTATTTCATAATTTCTATAATCCCAGAAAAGAGGCAAGAGGAATGAGGAGCATGATGGAGCAACTTAAAATGCCCATGTCAG GAAGTCACCATCTTGGAATCGATGACACTAGAAACATAGCTCGGATAGTACTCCGAATGCTCGCTGATGGTGCAGTAATGCCTATTACTGCTTGGAGGGA TCGAGTATCGTCTGAAAGTGTCAATTTTCTATACAAAAACCGTATAAGATGA
AA sequence Show only first row Show all	>Lus10009194 pacid=23145598 polypeptide=Lus10009194 locus=Lus10009194.g ID=Lus10009194.BGIv1.0 annot-version=v1.0 MSAIPTYNIHRASRSKTLNPKLTVLRALCTQNCSSSPPTSVSPNPSDGSSYRWKPMCLYYSQGKCTKMDDPDHLQVFNHDCSEEFRVLQLDFERKQPQKF DFLLVFDLEGKVEILEFPVLLIDTKTMTVVDLFHSFLVLTLITKIARFVRPSAMNEERVDEYIENKYGKFGVDRGNWDVKTQVPHQCKVSKMKLPPYFME WINLKDVFHNFYNPRKEARGMRSMMEQLKMPMSGSHHLGIDDTRNIARIVLRMLADGAVMPITAWRDRVSSESVNFLYKNRIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	0	1
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	2.2	0.9273
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	3.7	0.8992
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	3.9	0.9259
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	5.3	0.9203
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	5.3	0.9262
AT5G41270			unknown protein		Lus10030018 [exp]	5.9	0.8841
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	5.9	0.9126
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	6.1	0.8811
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	7.1	0.9149
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	12.2	0.8910

Compare expression of checked genes

Lus10009194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.