Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15110 187 / 4e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097800 [exp] 210 / 1e-66 AT3G15110 239 / 1e-78 unknown protein Potri.001G372850 [exp] 60 / 2e-11 AT3G15110 51 / 1e-08 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11282 [flax] [poplar] DUF3082 Protein of unknown function (DUF3082)
Representative CDS sequence Show only first row Show all	>Lus10009195 pacid=23145607 polypeptide=Lus10009195 locus=Lus10009195.g ID=Lus10009195.BGIv1.0 annot-version=v1.0 ATGTTGTTGCAGTATCACCATCACCAGTCCCCAACTGTGTTTCCTCAGTTCCGTAATTCCCCTCACATTCGCCACCATCACAAACCTCCTTCATTATACC TCCGAAGACCCACCTCTCTCTTCTCTCGCTCAGCCCTCCCTCCAAATTTACTCGAACCATGGCTGCTGCTCGCCCAAATCTCCGAATCCACCACCACCGT TATCGTACCCGTTCCCGTACCAGAAGATGGCGGCCCTGAGGAGCTCGCTTTCCCTTCTTTACCCGAGATTTTCGCCACTACCGACGACCCTTCTCCCATT CAGATAGCCACCAGTGTGCTGCTCACTGGAGCCATCTTCATCTTCCTTTTCCGTTCCATCCGCCGCCGTTTTAAGCGCGCCAAGGAACTGAGATTTAGAT CAACGGGGGCTAAGAAAACGCTGAAAGACGAGGCATTGGAAAGCTTGAAGGCCATGGGAGCAGCATCTCCAATTGAGAACAAAAAGCCCACTTCACCTGT GCAAGCACTTATAGGTGGGATATCAGCAGGCTTGATTGCCCTTGTTCTCTATAAGTTCACCACAACCATTGAAGCATCTCTCAATCGTCAGACCATATCA GACAATTTCTCGGTATCTCCTCCTCTTACTCTCGTCTGCTTTCAAATGTTTCTTCAACTGTTACTCACTCTTTTTGGCTGCACCTCTTTCAGGACCATAA TCAATGGGTTGTGCTACCTTGCGACGTTTGTTTTCGGCTTCAACGCTATTGGTTTAATACTCTACTCCGGCCAGCTTACGCTCAACTCTTTGTTGGAAGG ATCTTCGGAAGCTGAAACTCAAGCTCAAGGTGACAGTCAGTCGGATGCACTGAACTCGGCTTCTTCTGAGGATGCTGCTGATTCGCAGAGTAGTCAGGAA GATCAATATCCAGATGATGCCCAGTAG
AA sequence Show only first row Show all	>Lus10009195 pacid=23145607 polypeptide=Lus10009195 locus=Lus10009195.g ID=Lus10009195.BGIv1.0 annot-version=v1.0 MLLQYHHHQSPTVFPQFRNSPHIRHHHKPPSLYLRRPTSLFSRSALPPNLLEPWLLLAQISESTTTVIVPVPVPEDGGPEELAFPSLPEIFATTDDPSPI QIATSVLLTGAIFIFLFRSIRRRFKRAKELRFRSTGAKKTLKDEALESLKAMGAASPIENKKPTSPVQALIGGISAGLIALVLYKFTTTIEASLNRQTIS DNFSVSPPLTLVCFQMFLQLLLTLFGCTSFRTIINGLCYLATFVFGFNAIGLILYSGQLTLNSLLEGSSEAETQAQGDSQSDALNSASSEDAADSQSSQE DQYPDDAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15110			unknown protein		Lus10009195 [exp]	0	1
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	1.4	0.9375
AT3G51510			unknown protein		Lus10033303 [exp]	2.2	0.9380
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	4.9	0.9360
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	6.0	0.9357
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	6.7	0.9343
AT3G51510			unknown protein		Lus10034765 [exp]	7.1	0.9231
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	10.6	0.9290
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	11.4	0.9204
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	12.1	0.8879
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	13.0	0.9270

Compare expression of checked genes

Lus10009195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.