Plant FIBer expression Database

Lus10009197 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53860 593 / 0 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G398900
[exp]
628 / 0 AT5G53860 672 / 0.0 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
Potri.011G118000
[exp]
625 / 0 AT5G53860 695 / 0.0 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
PFAM info
Representative CDS sequence
>Lus10009197 pacid=23145602 polypeptide=Lus10009197 locus=Lus10009197.g ID=Lus10009197.BGIv1.0 annot-version=v1.0
ATGTCCAGAAGGAAGGCCGGCCCCTTACAGAAGTTTAAGCTGTTTGCCGACTCGCGATACAAGGAATTCACAAGACATTATGGCGACCAAATGTCCGAAA
TTTTGGACTTCCCCGTCAAGCTGGTGCTCTCCCCTCTCACCTTCGCCTTAGACTTTGTTGGCTCCGCTCCTCGTGGTTTTGGCGTCCCTGAGCTCATCTC
CAACCTCTCTTTTGGTTCCATATTTGCCGTGGCTACCCTTGGTACCTATGACATTGCTCTGGACTTGGGAAAGAAGGTGATATGCCAGAGGAACTGTCGA
ACTTGCAAAGGCTGGCAGGCATTATGTTGTACCATGTGTAGAGGATCAGGACGAGTGCAATACCGGGTGAAAAATTACACCTTGAGAAGTGGGGAGAAGG
CAACTGCAGAATCTCTTGCAGGTGCAATTTCTGAAAATCGAGCAGAAGTCATGCACATTCCGTCGGCCATGAATCTTAATGTTCCTTTACCGTTTAAAGA
CTGTCCAAGTTGTGATGGGACGGGGGTAATGGTGTGTCCTGAGTGCAAAGAGATAATAAATGTCAGGATCTCTGCAGATGATATTATGGATCCGCCAGAG
AAAGCTTACAACATTCTGAGCAAGATGTCATATCCTTATGAGGCTAGTACCGATTTGTATTGCTACATCAGTCATATCCGTGAAAGCATGAGAGATCCTA
GCATTGCTGCGTTTTGGTTGTTTACCTTCCCACAGGTCGTGGGTGAATTCAATCATGATGATGATGTGAAAAAGAAGATTTGGTGGCAATACAAGGAATC
ATTTCGTTATGATCAACTACGGGATGTTGTGGCCAAGCGGGCACCTGGATGGGAATTACTACAGGAAGCTATGATCTCGATCAATCCTGCTCGTGCCAGG
GAAGATCCAGTGGTTGTGAAAAGCATTCCGTACTACAGGGCCAAAAAGGCATTGGAGGCTGAAATCATGAGACTTGATCCACCACCACGGCCAAAAAAGT
GGGGCGAGCTTGACCTTCCGCTAAATGCATCATCTTGGAGTGAAGATGATCTTAGAAGTCCTGAAAAATTGATCGAGATGAATGTTCTTCTTAATGCACA
AAAAGAAATTGCTGACAAAGTTTTGGATACACAATGGGCAGCTAAATGGCGACAGGAAAAGCTGAATGAGCTGTTGGAAGAGAAGGTGCAGCCATACATT
AAGGAAGCGGATAGTGGCATCATTTCCGGGCCAATTGTTGTTCAGTCGCAAACTCCGCATAAAGTGGTGATTATCCTTCTCTTTCATGTCCATTGTCCAC
ACAAGGACTTACGAGTTGCATACACATCATATCATCTACTGTCAAGTTCTTGCTCTTGTCATTATCTTGATGCTGCATGCTCTGATATTACCTGTACCAA
TTACCAGCGGGCATATGTTTCTCCAATGCTGATACTGCTTAGATATGGGTTTTTCCTAGTAATCAGTGGGTTTCTGTGGACTCACCGCTATTGCAGCCAT
TTTTGTGTGGTAACTTTTGCAAGTGGGTTCGCTGATAAACTTATATGTTATAATATTTATTTGTTTGGATTTCAGGTGCAGAGGAGGCGAAAGAGATGGT
GGATTTTCTAA
AA sequence
>Lus10009197 pacid=23145602 polypeptide=Lus10009197 locus=Lus10009197.g ID=Lus10009197.BGIv1.0 annot-version=v1.0
MSRRKAGPLQKFKLFADSRYKEFTRHYGDQMSEILDFPVKLVLSPLTFALDFVGSAPRGFGVPELISNLSFGSIFAVATLGTYDIALDLGKKVICQRNCR
TCKGWQALCCTMCRGSGRVQYRVKNYTLRSGEKATAESLAGAISENRAEVMHIPSAMNLNVPLPFKDCPSCDGTGVMVCPECKEIINVRISADDIMDPPE
KAYNILSKMSYPYEASTDLYCYISHIRESMRDPSIAAFWLFTFPQVVGEFNHDDDVKKKIWWQYKESFRYDQLRDVVAKRAPGWELLQEAMISINPARAR
EDPVVVKSIPYYRAKKALEAEIMRLDPPPRPKKWGELDLPLNASSWSEDDLRSPEKLIEMNVLLNAQKEIADKVLDTQWAAKWRQEKLNELLEEKVQPYI
KEADSGIISGPIVVQSQTPHKVVIILLFHVHCPHKDLRVAYTSYHLLSSSCSCHYLDAACSDITCTNYQRAYVSPMLILLRYGFFLVISGFLWTHRYCSH
FCVVTFASGFADKLICYNIYLFGFQVQRRRKRWWIF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Lus10009197
[exp]
0 1
AT3G54090 FLN1 fructokinase-like 1 (.1) Lus10017191
[exp]
1.7 0.9472
AT1G32990 PRPL11 plastid ribosomal protein l11 ... Lus10010145
[exp]
2.4 0.9585
AT5G22640 EMB1211 embryo defective 1211, MORN (M... Lus10020545
[exp]
2.8 0.9546
AT3G26744 bHLH SCRM, ATICE1, I... SCREAM, A. THALIANA INDUCER OF... Lus10032542
[exp]
4.6 0.9401
AT5G22640 EMB1211 embryo defective 1211, MORN (M... Lus10009392
[exp]
4.9 0.9437
AT4G01310 Ribosomal L5P family protein (... Lus10036390
[exp]
5.9 0.9425
AT4G21770 Pseudouridine synthase family ... Lus10007657
[exp]
6.5 0.9409
AT4G17040 HON5, CLPR4 happy on norflurazon 5, CLP pr... Lus10011014
[exp]
8.1 0.9195
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Lus10012019
[exp]
8.5 0.9389
AT4G37510 Ribonuclease III family protei... Lus10019289
[exp]
9.2 0.9294

Lus10009197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.