Plant FIBer expression Database

Lus10009198 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53850 768 / 0 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005542
[exp]
493 / 1e-173 AT5G53850 402 / 1e-138 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10041928
[exp]
482 / 5e-169 AT5G53850 384 / 5e-131 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10015966
[exp]
345 / 4e-118 AT5G53850 223 / 5e-72 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10015967
[exp]
337 / 1e-113 AT5G53850 276 / 2e-91 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G399000
[exp]
854 / 0 AT5G53850 792 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Potri.011G118132
[exp]
472 / 1e-165 AT5G53850 425 / 1e-147 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Potri.011G118066
[exp]
280 / 2e-92 AT5G53850 264 / 8e-88 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00596 Aldolase_II Class II Aldolase and Adducin N-terminal domain
Representative CDS sequence
>Lus10009198 pacid=23145592 polypeptide=Lus10009198 locus=Lus10009198.g ID=Lus10009198.BGIv1.0 annot-version=v1.0
ATGGCGGCGAATGGAGTGGACGTGGCTTCGCAGGCTTATTTGGAGACCGAAGCAGTAAAGGAAACGAGGTCTCTGATTTCTGATCTGTGTCGTCAGTTCT
ACAGCCTTGGATGGGTATCCGGCACCGGCGGCAGCATCACGAGCAAGGTCCACGATGATCGCGTCCCTAAACCGAATCAGCTCATCCTCATGTCTCCTTC
TGGTGTTCAGAAGGAGAGAATGCAACCTGATGATATGTACGTCATGTCAGGAAATGGTTCAATATTGTATGCACCTTCACCCAAGCCTTACCCTCACAAG
CCTCCCAAGTGTTCTGATTGTGCTCCTTTGTTTATGAAGGCGTATCAGATGCGTGATGCAGGAGCTGTCATTCACAGTCATGGGATGGAGTCTTGTCTTG
TGACGATGCTCAATCCATCGGCAAAGGAGTTTCGGATTACTCATATGGAGATGATAAAAGGGATAAAGGGTCATGGATACTATGATGAACTTGTTGTTCC
AATAATAGAGAATACTGCCTATGAGAATGAGCTGACAGATTCTCTAACTAAAGCTATAGAAGCGTACCCAAAGACGACAGCTGTGCTTGTTCGGAACCAT
GGGATATATGTATGGGGAGACACATGGATTAGTGCCAAAACTCAGGCTGAATGTTACCATTATTTGTTTGATGCTGCAATTAAACTTCATAAAATGGGCC
TAGACTGGTCTACACCAACCCATGGTCCGATCCAGCAGGTCAGAGAAGTTATAAGTGCACCAGTGAAGGCAGGATTGAAGACTTTAGGTCATAATAATGA
ACCACTGCCTCGCTGCATCCTGCTGGACATTGAAGGGACTACTACACCAATAACCTTTGTTGCTGATGTCCTCTTTCCCTATGCTCGTGACAATGTTGGA
AAACATATATCAGCAACATATGACACAGAAGATACTCAAGGTGATATAAAGTTGTTGCGCTCTCAGGTTGAAGATGATTTGGCACAAGGTGTTAGTGGTG
CTGTACCCATCCCACCAGATGATGCTGGAAAAGATCCAGTCGTTGCTGCGCTGGTTGCAAATGTTGGCACAATGATAAAAGCAGACCGCAAGCTCACTGC
CTTGAAACAATTACAAGGGCACATATGGAGAACCGGTTTTCAGAATAATGAGTTGAAAGGAGTAATTTACGATGATGTACCTGAGGCATTGCAGAGCTGG
CATGGGTTGGGCATAAAGGTTTATATATACTCAAGTGGTAGCAGATTGGCACAACGGCTATTATTTGGTAACACAAATTCTGGAGATTTGAGGAAATACT
TGTCTGGGTTTTTTGACACTACTATTGGGAATAAAAAGGAAACAAGCAGTTACATTCATATTTGTGAATCGCTGGGAGTAGATAGCCCGTCTGATATTTT
GTTCTTGACGGATGTTGTACAAGAAGCAATTGCAGCCAAAGGAGCAGGTTTGAAGGTGATGATCTCTGTTCGGCCTGGGAATGCGTCTCTGCCGGAGAAT
CATGGGTTCCAGACCATCAACTCTTTTCTGGAAATATGA
AA sequence
>Lus10009198 pacid=23145592 polypeptide=Lus10009198 locus=Lus10009198.g ID=Lus10009198.BGIv1.0 annot-version=v1.0
MAANGVDVASQAYLETEAVKETRSLISDLCRQFYSLGWVSGTGGSITSKVHDDRVPKPNQLILMSPSGVQKERMQPDDMYVMSGNGSILYAPSPKPYPHK
PPKCSDCAPLFMKAYQMRDAGAVIHSHGMESCLVTMLNPSAKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLTKAIEAYPKTTAVLVRNH
GIYVWGDTWISAKTQAECYHYLFDAAIKLHKMGLDWSTPTHGPIQQVREVISAPVKAGLKTLGHNNEPLPRCILLDIEGTTTPITFVADVLFPYARDNVG
KHISATYDTEDTQGDIKLLRSQVEDDLAQGVSGAVPIPPDDAGKDPVVAALVANVGTMIKADRKLTALKQLQGHIWRTGFQNNELKGVIYDDVPEALQSW
HGLGIKVYIYSSGSRLAQRLLFGNTNSGDLRKYLSGFFDTTIGNKKETSSYIHICESLGVDSPSDILFLTDVVQEAIAAKGAGLKVMISVRPGNASLPEN
HGFQTINSFLEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G53850 haloacid dehalogenase-like hyd... Lus10009198
[exp]
0 1
AT5G38210 Protein kinase family protein ... Lus10028495
[exp]
10.3 0.9591
AT4G14710 ATARD2 RmlC-like cupins superfamily p... Lus10006617
[exp]
10.5 0.9446
AT3G14630 CYP72A9 "cytochrome P450, family 72, s... Lus10017775
[exp]
12.6 0.9547
AT3G23250 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) Lus10033889
[exp]
13.4 0.9557
AT1G15170 MATE efflux family protein (.1... Lus10028540
[exp]
16.2 0.9547
AT4G13430 ATLEUC1, IIL1 isopropyl malate isomerase lar... Lus10014463
[exp]
16.6 0.9439
AT4G30600 signal recognition particle re... Lus10017891
[exp]
17.2 0.9490
AT4G25030 unknown protein Lus10036514
[exp]
20.2 0.9430
AT2G38640 Protein of unknown function (D... Lus10007423
[exp]
21.0 0.9223
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Lus10036023
[exp]
22.4 0.9354

Lus10009198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.