Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 273 / 4e-86 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63130 261 / 4e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 257 / 6e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 257 / 1e-80 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 255 / 2e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 251 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 248 / 3e-77 RPF2 rna processing factor 2 (.1) AT1G62910 245 / 4e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 244 / 8e-76 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63150 244 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 600 / 0 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 563 / 0 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 530 / 0 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 517 / 0 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014242 [exp] 439 / 3e-154 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022861 [exp] 432 / 2e-149 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 420 / 2e-145 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008593 [exp] 421 / 5e-145 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 396 / 5e-138 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271400 [exp] 333 / 3e-110 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 331 / 1e-109 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 330 / 4e-109 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 329 / 9e-109 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 328 / 2e-108 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 327 / 6e-108 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 326 / 7e-108 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 325 / 4e-107 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 324 / 9e-107 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 321 / 6e-106 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009201 pacid=23145591 polypeptide=Lus10009201 locus=Lus10009201.g ID=Lus10009201.BGIv1.0 annot-version=v1.0 ATGGGTGAAACTAGTGCTGCTCAGAGATTGCTGGAGAAAATGGAAGATGGAGGTTGTCAACCAAATGTGGTTACTTACAATACAATTATAAATAGCCTAT GTACGGATGGGTTGATATCTGAAGCCTTAGATGAGTTTTACAAGATGAAGGATAAAAAGTGTTCACCAGATGTTGTTAGTTACAATTGTTTGATTCATGG TTTATGTGCTTCAAGTCGAAAGAATGAGGCTATATTGTTGTTCGGTGAAATGTTAGAAAGGAATGTCATTCCTGATGTAGTCACCTATAACATTCTGATT GATTCTTTTTGCAAAGATGGAATGGTCCGTGAGGCTAAAGCTATTGTCAAAGTGATGATGCAAAAAGGACAGCATTCGGATATCTTCACTTACAATTCAT TGCTGGATGGGTATTGTTTGCGTAATGAATTAGACAAAGCTCGTAACTTGTTCAATTCTTTAGGTAGCATGAAATGCGAGCCGGACGTTCATACTTATAA TATGATGATTAATGGATATTGTAAGAGTGACAGGTTCAGTGAAGCCAAACAGTTGTTGAGTGATATGATTAAGAAGGATTTAGTTCCAAACACTGTTACG TATAGTACTTTTGTGGATGGGTTTTGCCGAGCAGGGAGAATGGAAGATGCAGAAACACTTCTCAAAGAAATGTGCAACCATGGACAGTTTCCTAATGTCA TGACATGGGGAAGTTTGCTAAATGATTGGTGCAAAATAGGTCATCTGGACAAGGCATTAGCTCTATTACAAGAAATAAAAAGTAGCCGGTTGAAGCCTAA TAATGTCATGTATACTATTCTTATTGACAGTTTGTGGAAAGCAGGAAGGGGTAAGGAAGCAAGGGACATGTTTTCTGAGCTCTCTAAAGAAAGGGATTTA CAACCTAATTCCTACACATACACCACAGTAATTGATGGACTTTGTAGGCATGGTTTAGTAGAGGTTTAG
AA sequence Show only first row Show all	>Lus10009201 pacid=23145591 polypeptide=Lus10009201 locus=Lus10009201.g ID=Lus10009201.BGIv1.0 annot-version=v1.0 MGETSAAQRLLEKMEDGGCQPNVVTYNTIINSLCTDGLISEALDEFYKMKDKKCSPDVVSYNCLIHGLCASSRKNEAILLFGEMLERNVIPDVVTYNILI DSFCKDGMVREAKAIVKVMMQKGQHSDIFTYNSLLDGYCLRNELDKARNLFNSLGSMKCEPDVHTYNMMINGYCKSDRFSEAKQLLSDMIKKDLVPNTVT YSTFVDGFCRAGRMEDAETLLKEMCNHGQFPNVMTWGSLLNDWCKIGHLDKALALLQEIKSSRLKPNNVMYTILIDSLWKAGRGKEARDMFSELSKERDL QPNSYTYTTVIDGLCRHGLVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10009201 [exp]	0	1
AT5G09300			Thiamin diphosphate-binding fo...		Lus10033480 [exp]	5.8	0.6805
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	12.2	0.7128
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	14.6	0.7299
AT1G76405			unknown protein		Lus10025160 [exp]	25.6	0.7095
					Lus10025603 [exp]	27.2	0.7043
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	36.2	0.6675
AT5G06810			Mitochondrial transcription te...		Lus10039774 [exp]	37.0	0.6534
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	41.6	0.6854
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	44.4	0.6986
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	48.5	0.6528

Compare expression of checked genes

Lus10009201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.