Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23580 194 / 2e-61 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT3G50440 193 / 1e-60 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23600 192 / 1e-60 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23620 191 / 4e-60 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23610 186 / 3e-58 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23560 181 / 4e-56 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G37150 179 / 8e-56 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23550 179 / 1e-55 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23590 172 / 1e-52 ATMES8 methyl esterase 8 (.1) AT5G58310 164 / 1e-49 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005401 [exp] 505 / 0 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10009203 [exp] 389 / 3e-137 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005402 [exp] 386 / 1e-136 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 357 / 2e-125 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10015532 [exp] 232 / 3e-76 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 226 / 9e-74 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 186 / 4e-58 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10023326 [exp] 177 / 1e-54 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10003511 [exp] 148 / 2e-42 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036800 [exp] 278 / 1e-93 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G036700 [exp] 263 / 1e-88 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107500 [exp] 229 / 9e-75 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 226 / 1e-73 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.005G133700 [exp] 194 / 2e-61 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 192 / 2e-60 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 191 / 3e-60 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037700 [exp] 184 / 3e-57 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 177 / 2e-54 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 174 / 1e-53 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009205 pacid=23145606 polypeptide=Lus10009205 locus=Lus10009205.g ID=Lus10009205.BGIv1.0 annot-version=v1.0 ATGACGAGTAGGCATTTCGTACTACTTCATGGAGCCTGCAACGGAGCGTGGATCTGGTACAAAGTGAGTGCGCTGCTGAAAGAGGCTGGTCATAAGGTCA CCGCCATTGACCTGGCTTCTTCTGGGATCCACCCCAAGAAATGGGAAGAAGTTAATTCTTTCCTGGAATACTCTGAGCCCTTGCTTACTTTCATGGAATC TCTTCCTAGTGACGGCGAAAAGGTTGTCATTGTAGCTCACAGCCTCGGCGGCTATAGCGCCTCCATTGCCATGGAAAGGTTCCCTGAGAAGATCTCTCTT GGTGTCTTTGTCACCGCCAGCATGCTCGGCCCTGATCTTAACTACGAACTTATGGCTGAGAAGTATGTTGAATTTGCTGCGCCCATGATGGACACTGTAT TTACATATGGGAATGGCCCAGACAAAACACCAACCGTGGCGATGGTTGGTCCCAAGTACATGGAGGCTGTGAACTATCGGAAATCTCCCCGTGCGGACCT GGAGCTGGGATTAACATTGGTAAGACCGACTCCGGTGTTCGATCAAGAACAAGCTGCAATAGACACAAGAGTGACAAAGGAGAAATACGGAACTATTCCT CGGGTGTTTGTGCTTTGCGATGCTGAGTATAAGGGAGCATTCCAGTGGTGGCAAGTTAAGAACAACCCTCCTGATGAACACATACTAATTGAAGAGTCTG ATCACATGGTCATGCTGTCACAACCTGGTCCCCTCGTTGATTATCTCCTCAAAGTTGGTGCCAAATACCTCTGA
AA sequence Show only first row Show all	>Lus10009205 pacid=23145606 polypeptide=Lus10009205 locus=Lus10009205.g ID=Lus10009205.BGIv1.0 annot-version=v1.0 MTSRHFVLLHGACNGAWIWYKVSALLKEAGHKVTAIDLASSGIHPKKWEEVNSFLEYSEPLLTFMESLPSDGEKVVIVAHSLGGYSASIAMERFPEKISL GVFVTASMLGPDLNYELMAEKYVEFAAPMMDTVFTYGNGPDKTPTVAMVGPKYMEAVNYRKSPRADLELGLTLVRPTPVFDQEQAAIDTRVTKEKYGTIP RVFVLCDAEYKGAFQWWQVKNNPPDEHILIEESDHMVMLSQPGPLVDYLLKVGAKYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10009205 [exp]	0	1
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	3.2	0.8722
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	6.8	0.9140
AT4G21445			unknown protein		Lus10018419 [exp]	8.1	0.8898
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	9.2	0.8656
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	9.4	0.8712
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	11.4	0.9063
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	15.8	0.8952
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	17.3	0.8815
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	17.9	0.8804
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	20.1	0.8910

Compare expression of checked genes

Lus10009205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.