Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033450 [exp] 122 / 2e-36 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10020927 [exp] 121 / 4e-36 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033389 [exp] 107 / 2e-30 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10015472 [exp] 59 / 7e-12 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10012369 [exp] 56 / 2e-10 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10028019 [exp] 49 / 3e-08 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10022828 [exp] 47 / 3e-07 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10011894 [exp] 47 / 3e-07 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10028018 [exp] 46 / 6e-07 ND 39 / 5e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10009206 pacid=23145603 polypeptide=Lus10009206 locus=Lus10009206.g ID=Lus10009206.BGIv1.0 annot-version=v1.0 ATGGTGAAGGGAGTTTTAGTGGTAATGTTGTTGATTATTGGGTGCAGTGTTACTTTTTCAGTAGCCGAAGACGAAGAGCTCAACGTTTGGTACTGCAACG GCAATCGGTACACCAGGTTCTTCCATCCAGAACTGAAGTTTCACAAAAAGGACTCGCTTCACCAATTATGCTTAAATATACCAGATCCCACCAACTCCAA TGCCAAGTATATGCTCACATATCCACCTACCAATCCTCTGCTTTACGCCTCTTCTTTCTGCGAGAAGTCTTCAGTCTCGGCGTGCCAGCAATGTCTGCAG CTAGCTAAAAAAACGTTGCTTCATAAATGTGATAAGCACGCTATTGGGGGTGAATTCTATTCCGAGACTTGTGCCATGAGGTTCGAATTATATAACTTCT TTACTTAG
AA sequence Show only first row Show all	>Lus10009206 pacid=23145603 polypeptide=Lus10009206 locus=Lus10009206.g ID=Lus10009206.BGIv1.0 annot-version=v1.0 MVKGVLVVMLLIIGCSVTFSVAEDEELNVWYCNGNRYTRFFHPELKFHKKDSLHQLCLNIPDPTNSNAKYMLTYPPTNPLLYASSFCEKSSVSACQQCLQ LAKKTLLHKCDKHAIGGEFYSETCAMRFELYNFFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009206 [exp]	0	1
					Lus10005378 [exp]	3.0	1.0000
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	3.7	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	4.0	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	6.0	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	6.6	1.0000
					Lus10025806 [exp]	7.7	1.0000
					Lus10002413 [exp]	8.1	1.0000
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	9.1	1.0000
					Lus10001326 [exp]	10.1	1.0000
					Lus10003843 [exp]	10.2	1.0000

Compare expression of checked genes

Lus10009206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.