Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001304 [exp] 80 / 2e-17 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10029801 [exp] 77 / 4e-17 ND / Lus10024216 [exp] 66 / 2e-13 AT1G74670 106 / 1e-30 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10036397 [exp] 61 / 4e-12 ND / Lus10010518 [exp] 60 / 3e-11 ND / Lus10005217 [exp] 59 / 3e-10 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10035493 [exp] 58 / 1e-09 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10037707 [exp] 56 / 3e-09 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10030065 [exp] 54 / 1e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009207 pacid=23145608 polypeptide=Lus10009207 locus=Lus10009207.g ID=Lus10009207.BGIv1.0 annot-version=v1.0 ATGGATGAGCAAAAAAGAGAGAGCATGGGAATGAAGGAACCCATTGAGAAGGTAGGGGATTTTAGTGTTGTTGACGATATTGGGATGGATTCAATTCGTG CTGCTGTAGAGGAAGATTTCCCGCGTCAGGATTTGAACTATACACATAGCAAGTGGGTAGCTTGGATGTGGGGTTGTTGCCAGGTAATGGACCAAGATGC TGGAGTTGGTTCTGAAGGGACATTGGAGCGAAATGAGGGGAATGAACATGGGAAGGGCAGTGAGGCTGAAGGACAACAAGGTCAACAAGATGGTTTGGAG GAAGATTTGCAGGAACCTCCTGCTAATAAATTGAGGAAATCTCCGGTGGGTAAAGGCCGACCGGCTGTAAAGAAGAGAAAAACGGACACCGATTTAAAGT ACCTTGAGGTCCTAGACTCTATGGTTGTGGATGGGGTCTTCACCATCTCGAAGGTTGTGATTGCGAAAGGTTTGGCCAGGCTGCGTGCAGTTGCCGTCAG TCGATTTGTAGGTTCGACTCGTTCAATTCAGGTCAGCTCCTCTATGATTAATAGGACGTGGGGCTTTGAGGGTGAGCTCGTTCTTTCGAAGCTCTTCGAG GGGTTCTTTTTGTTCTAG
AA sequence Show only first row Show all	>Lus10009207 pacid=23145608 polypeptide=Lus10009207 locus=Lus10009207.g ID=Lus10009207.BGIv1.0 annot-version=v1.0 MDEQKRESMGMKEPIEKVGDFSVVDDIGMDSIRAAVEEDFPRQDLNYTHSKWVAWMWGCCQVMDQDAGVGSEGTLERNEGNEHGKGSEAEGQQGQQDGLE EDLQEPPANKLRKSPVGKGRPAVKKRKTDTDLKYLEVLDSMVVDGVFTISKVVIAKGLARLRAVAVSRFVGSTRSIQVSSSMINRTWGFEGELVLSKLFE GFFLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009207 [exp]	0	1
					Lus10011832 [exp]	4.2	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	6.5	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	8.3	1.0000
					Lus10027689 [exp]	8.5	1.0000
					Lus10009727 [exp]	17.5	1.0000
					Lus10027991 [exp]	17.6	1.0000
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	18.1	1.0000
AT3G05610			Plant invertase/pectin methyle...		Lus10031469 [exp]	19.1	0.9279
					Lus10003536 [exp]	19.3	1.0000
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	21.0	1.0000

Compare expression of checked genes

Lus10009207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.