Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15260 299 / 5e-101 Protein phosphatase 2C family protein (.1.2) AT4G28400 263 / 6e-87 Protein phosphatase 2C family protein (.1) AT2G34740 256 / 2e-83 Protein phosphatase 2C family protein (.1.2) AT2G20630 253 / 4e-83 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G22280 243 / 7e-79 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 237 / 1e-76 Protein phosphatase 2C family protein (.1) AT1G78200 215 / 4e-68 Protein phosphatase 2C family protein (.1.2) AT5G10740 177 / 9e-53 Protein phosphatase 2C family protein (.1) AT4G31750 171 / 1e-50 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 173 / 4e-50 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005405 [exp] 313 / 2e-106 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10018618 [exp] 313 / 2e-106 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 258 / 5e-85 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 257 / 1e-84 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10020924 [exp] 254 / 3e-83 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 239 / 4e-77 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 237 / 7e-77 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 235 / 9e-76 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 235 / 1e-75 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398100 [exp] 390 / 6e-137 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 385 / 7e-135 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.017G013300 [exp] 277 / 3e-92 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 253 / 6e-83 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 252 / 1e-82 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 241 / 3e-78 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 241 / 3e-78 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 167 / 2e-49 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 166 / 4e-49 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 166 / 1e-48 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10009210 pacid=23145605 polypeptide=Lus10009210 locus=Lus10009210.g ID=Lus10009210.BGIv1.0 annot-version=v1.0 ATGTCCGGCAAGGATATCATCAACAAAATGAAGGAAAAAGTGGGACTTGGATCGTCGGCCGACTCAGGGAAGGGCAAAAGCAGAGTGGACAAACACGTGA GCCATGGCTACCACCTTGTCAAAGGCAGATCCAATCACCCCATGGAAGATTACATCGTTTCCCAATTCCGCACTGTCCAAGGCAACGAGCTAGGATTGTT TGCTATCTTCGATGGCCATCTCAGCCAAAGCGTCCCCGATTACCTCAGCTCCAATCTCTTCGACAACATCTTGAAAGAGGTAATTCATGTTTGTTGTAGT CCCCTTGTTGTAGCACCTGATTTTGTTCCCAAAGCTTTTAGTATTGAAATCCGGGATGCTCGATCATTTGGACTCCCTTGTGATGGCATCACTGATCTCA CTAGGGTGATCTCACTAGGGTTGATGGCCTGTGATAGCGGCCTGGTGCCCGTCGAAGGGTTCTTCGAGAATTTTTGGACGGAACCGGAGAAGGCGATAAC TCGAGCATACAAGGAGACTGACAGCGACATATTGGATAATGCAGGGAATTTGGGGAAAGGGGGTTCCACGGCGGTCACCGCCATACTCATAAACTGCCAA AAGCTGGTGGTGGCCAACGTTGGGGATTCTCGCGCTGTCATCTCCAAGAAGGGCGTCGCCAAGCAGTTGTCCATAGATCATGAGCCTGAAATGGAGAGGT CTGAAATCGAGAACAGAGGTGGATTTGTCACAAATTTCCCAGGAGATGTAGCGAGAGTGGATGGTCAATTGGCAGTGGCGAGAGCATTTGGGGACAAGAG CTTGAAGAAGCATCTGAGTTCTGATCCCTACGTTATTGTGGAGAAAATAGATGACGACACTGATTGTGTTATCTTAGCTAGCGATGGCTTATGGAAGGTA ATGTCGAACCAAGAAGCGGTAGATGCTATCAAGGATGTGAAGGATGCTCGTGCCGCGGCGAAGGGCCTTACAGAAGAGGCACTGAATAGGCGAAGTTCAG ATGATATTTCATGCATAGTTATCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10009210 pacid=23145605 polypeptide=Lus10009210 locus=Lus10009210.g ID=Lus10009210.BGIv1.0 annot-version=v1.0 MSGKDIINKMKEKVGLGSSADSGKGKSRVDKHVSHGYHLVKGRSNHPMEDYIVSQFRTVQGNELGLFAIFDGHLSQSVPDYLSSNLFDNILKEVIHVCCS PLVVAPDFVPKAFSIEIRDARSFGLPCDGITDLTRVISLGLMACDSGLVPVEGFFENFWTEPEKAITRAYKETDSDILDNAGNLGKGGSTAVTAILINCQ KLVVANVGDSRAVISKKGVAKQLSIDHEPEMERSEIENRGGFVTNFPGDVARVDGQLAVARAFGDKSLKKHLSSDPYVIVEKIDDDTDCVILASDGLWKV MSNQEAVDAIKDVKDARAAAKGLTEEALNRRSSDDISCIVIKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	0	1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	4.2	0.8561
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	4.4	0.8746
AT1G47710			Serine protease inhibitor (SER...		Lus10002792 [exp]	5.1	0.8441
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10020054 [exp]	5.7	0.8648
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	8.4	0.8622
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	10.0	0.8721
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	11.7	0.8620
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Lus10042637 [exp]	11.7	0.8263
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	12.6	0.8516
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	14.5	0.8490

Compare expression of checked genes

Lus10009210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.