Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15280 62 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005404 [exp] 167 / 1e-53 AT3G15280 53 / 2e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398300 [exp] 69 / 8e-15 AT3G15280 51 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009211 pacid=23145594 polypeptide=Lus10009211 locus=Lus10009211.g ID=Lus10009211.BGIv1.0 annot-version=v1.0 ATGGCAGCAATATTTCTTGCGAGGAGATCAGCAGCATCAGCCACCATTAACATCCCCAGAGCTCCCGCAGTCTTTGTTGATTCATCCACCTCCAGGTTCT CTACTGCCTTTCAGCGAGATGAGTTTCAGGGGAGAAATCCGACGGCGGAGTCCTCTGATGAAAGGGCAGCTGCTTTCGTGGCGGACAGTGTGAAACAGGG GGTTGAGAAAGCCACGGAGGTAGCTGATGCGATGGTGGACGGGGCAAAGAAGACAGCGGAGCGAGGGTGGGAAGCGGCTAAGGATGCAAATCAGGGGGTG TGGGAAACGGTGGTAGATGGCGGCAGCGGAGGAGGAGGAAGAAGTCAGGGAGAAGTTGGGGGTGGTGATGAAAAAGGGGAGACGGTAGTGGACCAGGTGG TGGAGGAGATTAAAGATATAGATGGGCCAGTGGATATGGCTGAATACAGAGCGATAGAACAAAACTTGCAGGACTTGAACAATGAAGTCGATTAA
AA sequence Show only first row Show all	>Lus10009211 pacid=23145594 polypeptide=Lus10009211 locus=Lus10009211.g ID=Lus10009211.BGIv1.0 annot-version=v1.0 MAAIFLARRSAASATINIPRAPAVFVDSSTSRFSTAFQRDEFQGRNPTAESSDERAAAFVADSVKQGVEKATEVADAMVDGAKKTAERGWEAAKDANQGV WETVVDGGSGGGGRSQGEVGGGDEKGETVVDQVVEEIKDIDGPVDMAEYRAIEQNLQDLNNEVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15280			unknown protein		Lus10009211 [exp]	0	1
AT4G19820			Glycosyl hydrolase family prot...		Lus10036315 [exp]	2.0	0.6038
AT4G16195			Plant self-incompatibility pro...		Lus10011069 [exp]	12.4	0.6266
					Lus10020204 [exp]	17.3	0.5463
					Lus10000178 [exp]	17.7	0.5717
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	25.4	0.5457
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	33.2	0.5617
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029019 [exp]	38.0	0.5140
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	42.7	0.5147
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	51.5	0.5297
					Lus10010847 [exp]	61.5	0.5140

Compare expression of checked genes

Lus10009211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.